Browse Element(s) Details


OsAffx.27252.1.S1_at

Description tigr:9633.m03745
TID=OsAffx.27252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4015011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27252.1.S1_at--747--8111Chr05:23499101..23499125 (25 bp)
GGACTACTGAAAAACAACACCTTAT
LOC_Os05g40150
OsAffx.27252.1.S1_at--504--5591Chr05:23499055..23499079 (25 bp)
GAAATCTGTGGTTCTACAAAAGGAC
LOC_Os05g40150
OsAffx.27252.1.S1_at--202--8211Chr05:23499025..23499049 (25 bp)
GGAAGGAGCATGTAAATCTGTCGAA
LOC_Os05g40150
OsAffx.27252.1.S1_at--154--4151Chr05:23498991..23499015 (25 bp)
CGCGGAGTCTTAACGGCAGGATCAT
LOC_Os05g40150
OsAffx.27252.1.S1_at--7--6451Chr05:23498972..23498996 (25 bp)
GATCATGGTGGCGTAGGCAGCCCCA
LOC_Os05g40150
OsAffx.27252.1.S1_at--583--3371Chr05:23498955..23498979 (25 bp)
CAGCCCCAGTTCGAGCGTTTTTATA
LOC_Os05g40150
OsAffx.27252.1.S1_at--456--5871Chr05:23498943..23498967 (25 bp)
GAGCGTTTTTATAAATCTGCCGAAA
LOC_Os05g40150
OsAffx.27252.1.S1_at--1115--8251Chr05:23498338..23498362 (25 bp)
GGCAGCATCATATCTGGAGCCCAAA
LOC_Os05g40150
OsAffx.27252.1.S1_at--800--5871Chr05:23498322..23498346 (25 bp)
GAGCCCAAACTGTTCCCATCAAGAA
LOC_Os05g40150
OsAffx.27252.1.S1_at--559--2091Chr05:23498214..23498238 (25 bp)
ACATCAATGTCATCTACTACTCGCC
LOC_Os05g40150
OsAffx.27252.1.S1_at--288--5791Chr05:23498158..23498182 (25 bp)
GACGAAAGTACTGAAGCCAGCGAGA
LOC_Os05g40150
Target Sequence 
GGACTACTGAAAAACAACACCTTATTGTGAAAGAAGGCTTGAATGAGAAATCTGTGGTTCTACAAAAGGACCACGGGGAA
GGAGCATGTAAATCTGTCGAAGGAGAAAGGCGCGGAGTCTTAACGGCAGGATCATGGTGGCGTAGGCAGCCCCAGTTCGA
GCGTTTTTATAAATCTGCCGAAAGCAGAGCTGACGACGGCGGCGGCGGCGGCAGCATCATATCTGGAGCCCAAACTGTTC
CCATCAAGAACTTCACCGGCGGCTGGCCGGCTCCGCCGTGGGAGGAGGGCTCCGGGACGACGATGCCGCCGGTGTACATC
AATGAAGGCGAGTACATCAATGTCATCTACTACTCGCCCCCACGTTCGTCTACGACGACGTCGTCGCAGGACGAAAGTAC
TGAAGCCAGCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis