Browse Element(s) Details


OsAffx.27253.1.S1_x_at

Description tigr:9633.m03748
TID=OsAffx.27253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4018011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042548biological_processregulation of photosynthesis, light reaction
GO:0042549biological_processphotosystem II stabilization
GO:0009507cellular_componentchloroplast
GO:0009579cellular_componentthylakoid
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27253.1.S1_x_at--671--1031Chr05:23516968..23516992 (25 bp)
AGGTGAAGCTCATCGACTTCGGCGC
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--1079--4891Chr05:23517007..23517031 (25 bp)
GCATCGGCAAGAACTACGTCCCCGA
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--31--5911Chr05:23517066..23517090 (25 bp)
GAGCTCTACGTCCTCCCCGAGGAGA
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--1148--9491Chr05:23517127..23517252 (25 bp)
TCTCCCCGATCCTCTGGCAGATTAA
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--1025--8471Chr05:23517244..23517266 (23 bp)
TGGCAGATTAACAGCCCGGACCTGT
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--335--8091Chr05:23517259..23517283 (25 bp)
GGACCTGTTCGACATGTACTCGGCG
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--397--651Chr05:23517296..23517320 (25 bp)
ATGCAGATGGCGTCGCCGATGCTGA
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--211--4011Chr05:23517306..23517330 (25 bp)
CGTCGCCGATGCTGAGGTCGCCGTC
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--819--8311Chr05:23517333..23517357 (25 bp)
GGCTCAAGAACTTCAACGCCGAGCT
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--600--5611Chr05:23517374..23517398 (25 bp)
GACCTCAACCGGTGGCGGGAGACCA
LOC_Os05g40180
OsAffx.27253.1.S1_x_at--532--8051Chr05:23517405..23517429 (25 bp)
GGAGACCCGACCTGCAGATCCTCGA
LOC_Os05g40180
Target Sequence 
AGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGAC
CCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCT
CTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGT
CGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTCAAGGCCGCCGGGTACGACCTCAACCGGTGG
CGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27253.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis