Browse Element(s) Details


Os.47852.1.S1_at

Description gb:AK102461.1
DB_XREF= gi:32987670
TID=Os.47852.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094D02, full insert sequence.
FL= gb:AK102461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4022011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47852.1.S1_at--688--3511Chr05:23539970..23539994 (25 bp)
CATGTACGGCAGCTCGCGCTACGAG
LOC_Os05g40220
Os.47852.1.S1_at--636--1591Chr05:23539960..23539984 (25 bp)
AGCTCGCGCTACGAGGCGATGCTGC
LOC_Os05g40220
Os.47852.1.S1_at--1144--4071Chr05:23539914..23539938 (25 bp)
CGAGCTGGCTGCACGGCTTCGACGA
LOC_Os05g40220
Os.47852.1.S1_at--7--10651Chr05:23539703..23539727 (25 bp)
TTCCCTTGGGTACAATACTCTGCTG
LOC_Os05g40220
Os.47852.1.S1_at--230--10211Chr05:23539674..23539698 (25 bp)
TATTTTACTTTACCGATATAAGACG
LOC_Os05g40220
Os.47852.1.S1_at--94--7751Chr05:23539637..23539661 (25 bp)
GGTGTGGCTCATTTAATTTATCCCT
LOC_Os05g40220
Os.47852.1.S1_at--1107--8311Chr05:23539632..23539656 (25 bp)
GGCTCATTTAATTTATCCCTGGAGT
LOC_Os05g40220
Os.47852.1.S1_at--135--6091Chr05:23539611..23539635 (25 bp)
GAGTAGGGATTGGTTTCCACGTACT
LOC_Os05g40220
Os.47852.1.S1_at--545--6611Chr05:23539604..23539628 (25 bp)
GATTGGTTTCCACGTACTGTTGTAC
LOC_Os05g40220
Os.47852.1.S1_at--99--3991Chr05:23539592..23539616 (25 bp)
CGTACTGTTGTACTGAGAATCCACA
LOC_Os05g40220
Os.47852.1.S1_at--357--51Chr05:23539526..23539550 (25 bp)
ATTGTAATGCCATTGGTTTCTCATG
LOC_Os05g40220
Target Sequence 
CATGTACGGCAGCTCGCGCTACGAGGCGATGCTGCTGAGGGAGGACGTGAGGAACACGAGCTGGCTGCACGGCTTCGACG
ACAGCAAGCCCGACCAGAGCCCACTGTTCGACCACCGGTTCGAGCCGCTCCCAGAGCCCTTCAGCCCGCTATGACGAATG
CACGGTTGCCGCTGCCTGTAAATCTGCTGTTCCATGGTCTGCTTTGCAAGATGTGTATGCCATTCCATATGTTTTCTGTT
TGGNTTCTGTTTCNNAGGTTCTACACGCTCTTCCCTTGGGTACAATACTCTGCTGGTAATATTTTACTTTACCGATATAA
GACGGAGAGATTGTGGGGTGTGGCTCATTTAATTTATCCCTGGAGTAGGGATTGGTTTCCACGTACTGTTGTACTGAGAA
TCCACAAGAGTATAGGAATTGATAAAAACAGTAAAGATTTGTAAGTTATTGTAATGCCATTGGTTTCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis