Browse Element(s) Details


Os.7020.1.S1_x_at

Description gb:AK059369.1
DB_XREF= gi:32969387
TID=Os.7020.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E11, full insert sequence.
FL= gb:AK059369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4026011/11Ycf52, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7020.1.S1_x_at--198--6931Chr05:23562012..23562036 (25 bp)
GTATGGCGCGAGCAACTTCAGACCA
LOC_Os05g40260
Os.7020.1.S1_x_at--452--5851Chr05:23562032..23562056 (25 bp)
GACCATGCCTTTAATGCTACCATTT
LOC_Os05g40260
Os.7020.1.S1_x_at--526--1731Chr05:23562050..23562074 (25 bp)
ACCATTTGGGATGTTCTCGTTGACC
LOC_Os05g40260
Os.7020.1.S1_x_at--35--10531Chr05:23562076..23562179 (25 bp)
TTCATATCAGGGTCAAGGTCTTGGT
LOC_Os05g40260
Os.7020.1.S1_x_at--1156--7051Chr05:23562198..23562222 (25 bp)
GTAATCCGAACTTTGCTCCAGAGAG
LOC_Os05g40260
Os.7020.1.S1_x_at--895--6571Chr05:23563160..23563184 (25 bp)
GATTCGAAGCTGACCCTCAAGGCAT
LOC_Os05g40260
Os.7020.1.S1_x_at--658--3211Chr05:23563185..23563209 (25 bp)
CAAGGGCATGTTCTGGTACCCCAGA
LOC_Os05g40260
Os.7020.1.S1_x_at--942--6971Chr05:23563200..23563224 (25 bp)
GTACCCCAGATTTTAGTGCCAGCGG
LOC_Os05g40260
Os.7020.1.S1_x_at--1031--5631Chr05:23563228..23563252 (25 bp)
GACACCTTCCTGTTCATCAGTAATG
LOC_Os05g40260
Os.7020.1.S1_x_at--18--411Chr05:23563243..23563267 (25 bp)
ATCAGTAATGCCTGGTTCTCACCGC
LOC_Os05g40260
Os.7020.1.S1_x_at--1086--10811Chr05:23563283..23563307 (25 bp)
TTGTCCAGTTGAGTCGAGCTCAGCT
LOC_Os05g40260
Target Sequence 
GTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAA
GGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGA
TAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCA
GATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTC
CAGTTGAGTCGAGCTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7020.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis