Browse Element(s) Details


OsAffx.4572.1.S1_at

Description tigr:9633.m03755
TID=OsAffx.4572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4025011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4572.1.S1_at--807--8811Chr05:23557403..23557427 (25 bp)
TGTTGAGACCATGGGTGCCACCAAT
LOC_Os05g40250
OsAffx.4572.1.S1_at--450--7631Chr05:23557966..23557990 (25 bp)
GGGACATGGTCGAGGCACTTGCAAC
LOC_Os05g40250
OsAffx.4572.1.S1_at--424--8051Chr05:23557992..23558016 (25 bp)
GGAGATTACAGTACCCAGGCTCTAC
LOC_Os05g40250
OsAffx.4572.1.S1_at--1076--6451Chr05:23558022..23558046 (25 bp)
GATAATTTCTGCGTCCTATGCACGT
LOC_Os05g40250
OsAffx.4572.1.S1_at--538--10131Chr05:23558038..23558062 (25 bp)
TATGCACGTCGTCATTCTCTTCAGA
LOC_Os05g40250
OsAffx.4572.1.S1_at--54--1411Chr05:23558060..23558084 (25 bp)
AGACTGCTGCACTTATCACATGGAG
LOC_Os05g40250
OsAffx.4572.1.S1_at--721--291Chr05:23558130..23558154 (25 bp)
ATAGAGGTGGTTTACGTCGACGGCT
LOC_Os05g40250
OsAffx.4572.1.S1_at--183--4171Chr05:23558167..23558191 (25 bp)
CGCCGTCTGAGCTAGTCTCTGAAAA
LOC_Os05g40250
OsAffx.4572.1.S1_at--929--5511Chr05:23558187..23558211 (25 bp)
GAAAATGTCCTTGCCGGTGTTCAGG
LOC_Os05g40250
OsAffx.4572.1.S1_at--408--6291Chr05:23558357..23558381 (25 bp)
GATGAAACTGTACTTTACCCGCTCA
LOC_Os05g40250
OsAffx.4572.1.S1_at--306--9131Chr05:23558398..23558422 (25 bp)
TGCGGTTGATCGTTTGGGCCATGTC
LOC_Os05g40250
Target Sequence 
TGTTGAGACCATGGGTGCCACCAATGTACGGGCGGAAGAAGGATTTCTCGAGCTGCGTGGACTGCCACCAACGAATCAAG
AAGCCAACAAACGCGCTCTACTGCTGTACAATGTGCAAGCTTAACCAAGTCCAAGAAGAGGACCAAGGGAGGGACATGGT
CGAGGCACTTGCAACAGGAGATTACAGTACCCAGGCTCTACTCCATGATAATTTCTGCGTCCTATGCACGTCGTCATTCT
CTTCAGACTGCTGCACTTATCACATGGAGCTACACCATCCAGATGTTGAGGATATTGGTGTATGGCTGGTACTGATAGAG
GTGGTTTACGTCGACGGCTGGGCAGCGGTTGCGCCGTCTGAGCTAGTCTCTGAAAATGTCCTTGCCGGTGTTCAGGTCCT
GCAAGTGCAAGCTGATGATGAAACTGTACTTTACCCGCTCAGGAGGACAGTAGCTGCTGCGGTTGATCGTTTGGGCCATG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis