Browse Element(s) Details


Os.53921.1.S1_at

Description gb:AK100850.1
DB_XREF= gi:32986059
TID=Os.53921.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123I11, full insert sequence.
FL= gb:AK100850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4023011/11Vacuolar ATP synthase subunit E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007030biological_processGolgi organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005753cellular_componentproton-transporting ATP synthase complex (sensu Eukaryota)
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53921.1.S1_at--378--9771Chr05:23550097..23550121 (25 bp)
TAAGGTGAACCTCCCCAAGATCCTC
LOC_Os05g40230
Os.53921.1.S1_at--896--4311Chr05:23550177..23550302 (25 bp)
CCTTCTGCTCTGGAGGTGTGGTGAT
LOC_Os05g40230
Os.53921.1.S1_at--154--8831Chr05:23550299..23550323 (25 bp)
TGATTGCATCGCAGGACGGCAAGAT
LOC_Os05g40230
Os.53921.1.S1_at--842--5171Chr05:23550317..23550341 (25 bp)
GCAAGATCGTCTGCGACAACACGCT
LOC_Os05g40230
Os.53921.1.S1_at--584--6131Chr05:23550348..23550372 (25 bp)
GAGGGTGGAAATCTCTTTCAAGCAA
LOC_Os05g40230
Os.53921.1.S1_at--1068--9551Chr05:23550480..23550504 (25 bp)
TCTTCAGCCAGAAAGTGTCACAATA
LOC_Os05g40230
Os.53921.1.S1_at--159--10391Chr05:23550512..23550536 (25 bp)
TTTTCGGGTTCTTGATATCCAGGAA
LOC_Os05g40230
Os.53921.1.S1_at--438--7011Chr05:23550586..23550610 (25 bp)
GTACTATTCCCTTCTGTCAGTTAAA
LOC_Os05g40230
Os.53921.1.S1_at--302--7071Chr05:23550601..23550625 (25 bp)
GTCAGTTAAAGTGCACAGGCCGTGT
LOC_Os05g40230
Os.53921.1.S1_at--320--3311Chr05:23550614..23550638 (25 bp)
CACAGGCCGTGTATGCAACTAGTAA
LOC_Os05g40230
Os.53921.1.S1_at--1161--8872Chr05:23550716..23550740 (25 bp)
TGAGAAGTTGAGAACCCTTTGAGTT
LOC_Os05g40230
Target Sequence 
TAAGGTGAACCTCCCCAAGATCCTCATCGACGGCAAGGTCTACCTCCCGCCGCCCAAGACCGCCCGTGACGCCCATGGCC
CCTTCTGCTCTGGAGGTGTGGTGATTGCATCGCAGGACGGCAAGATCGTCTGCGACAACACGCTGGATGCGAGGGTGGAA
ATCTCTTTCAAGCAAAAGCTTCCTGAGATCAGGAAGAAGCTCTTCAGCCAGAAAGTGTCACAATAAGCAATTTTTTCGGG
TTCTTGATATCCAGGAATAAAACAAAGACGTGGTTCACAATATGTATATTTTTGTTGTATTTTGGAGTACTATTCCCTTC
TGTCAGTTAAAGTGCACAGGCCGTGTATGCAACTAGTAANGNCAAAAGTTCATTTCAGTGAAAGCAAATGTCTCGNTGTG
TAAAACACTATATATATCTCTTTGTGTAAAACACCATGAGAAGTTGAGAACCCTTTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis