Browse Element(s) Details


Os.8786.3.S1_x_at

Description gb:AK120184.1
DB_XREF= gi:37989807
TID=Os.8786.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034D11, full insert sequence.
FL= gb:AK120184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4027011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed
LOC_Os05g40290Os.8667.1.S1_at11/115+23589542..23594088KH domain-containing protein, putative, expressed
LOC_Os05g40300NANA5+23602655..23602976expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8786.3.S1_x_at--96--1711Chr05:23576176..23576200 (25 bp)
ACCAATGTTTTTGTGCGGTGCCACT
LOC_Os05g40270
Os.8786.3.S1_x_at--673--6091Chr05:23576230..23576254 (25 bp)
GAGTCACAGACTTTCATCCATACGA
LOC_Os05g40270
Os.8786.3.S1_x_at--28--9051Chr05:23576287..23576311 (25 bp)
TGCAGTTGTTTCCTTACCAGCTATA
LOC_Os05g40270
Os.8786.3.S1_x_at--29--2511Chr05:23576391..23576415 (25 bp)
AACATGTCTGAGGTTGTCCGACTCA
LOC_Os05g40270
Os.8786.3.S1_x_at--759--1411Chr05:23576415..23576439 (25 bp)
AGACACGTACTTGCTGGATGGGAAA
LOC_Os05g40270
Os.8786.3.S1_x_at--720--6871Chr05:23576454..23576478 (25 bp)
GTATTTGGTCCATATGAGCTTCTCA
LOC_Os05g40270
Os.8786.3.S1_x_at--18--5931Chr05:23576469..23576493 (25 bp)
GAGCTTCTCAATTTCACACTTGGTT
LOC_Os05g40270
Os.8786.3.S1_x_at--1001--4751Chr05:23576960..23576984 (25 bp)
GCTGCACTGGGTGGTATCTTGGCAA
LOC_Os05g40270
Os.8786.3.S1_x_at--1154--10471Chr05:23577106..23577130 (25 bp)
TTACATTGCATTCCAAGCGGTCATG
LOC_Os05g40270
Os.8786.3.S1_x_at--1146--6271Chr05:23577131..23577155 (25 bp)
GATGTATGTACTTTGTGGCACTCCT
LOC_Os05g40270
Os.8786.3.S1_x_at--39--8671Chr05:23577144..23577168 (25 bp)
TGTGGCACTCCTGTTATCTTCATAA
LOC_Os05g40270
Target Sequence 
ACCAATGTTTTTGTGCGGTGCCACTTGGAGTTGGACTTCGGTTGAAGAGTCCAGGAGTCACAGACTTTCATCCATACGAA
AATGCTTTCAAGATTGACCTAACTTCTTTGTTGCAGTTGTTTCCTTACCAGCTATATATTGAGAACTACATATGGGAAGT
TGGTCCAAGGCTAAATATGCACCTAAAGTTATTTCCAAGCAATACAAGTTTGTTCAACATGTCTGAGGTTGTCCGACTCA
GACACGTACTTGCTGGATGGGAAATTACACTTTTAGATGTATTTGGTCCATATGAGCTTCTCAATTTCACACTTGGTTCC
TATGAAGATGAATATCCAAATCTAGCTTCATCAGGTTTAAGCAAAGCTGCACTGGGTGGTATCTTGGCAAGCACAATAGC
TAGTGCTATTGCACTTTCTGCAGTAGTTACTGCTCTTATAATGAGAAGGAATTCAAGAACTAATAGAATTTCAAGACGTT
CATGTAAGTCATTGTAAGAAGTAAGCTATCATTACATTGCATTCCAAGCGGTCATGGATGTATGTACTTTGTGGCACTCC
TGTTATCTTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8786.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis