Browse Element(s) Details


Os.49461.1.S1_at

Description gb:AK068705.1
DB_XREF= gi:32978722
TID=Os.49461.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160D16, full insert sequence.
FL= gb:AK068705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4028010/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed
LOC_Os05g40290Os.8667.1.S1_at11/115+23589542..23594088KH domain-containing protein, putative, expressed
LOC_Os05g40300NANA5+23602655..23602976expressed protein
LOC_Os05g40310OsAffx.4573.1.S1_at11/115+23605464..23607764expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49461.1.S1_at--486--5431NONE
GAACCAGACAGATTTAAGATCTACA
NONE
Os.49461.1.S1_at--560--1271Chr05:23579697..23579721 (25 bp)
AGATCTACATCATAAAAGCTGTTGA
LOC_Os05g40280
Os.49461.1.S1_at--252--6331Chr05:23579668..23579692 (25 bp)
GATGCAAATGAGTCTGAGCCTGCTG
LOC_Os05g40280
Os.49461.1.S1_at--128--8931Chr05:23579654..23579678 (25 bp)
TGAGCCTGCTGATGAGGAAGCTATT
LOC_Os05g40280
Os.49461.1.S1_at--731--8131Chr05:23579621..23579645 (25 bp)
GGACACCAGTACAGAGGATGCAGCT
LOC_Os05g40280
Os.49461.1.S1_at--328--5011Chr05:23579594..23579618 (25 bp)
GCAGGATGACTCACCTAATGCTGAA
LOC_Os05g40280
Os.49461.1.S1_at--83--5711Chr05:23579587..23579611 (25 bp)
GACTCACCTAATGCTGAACCTTTAA
LOC_Os05g40280
Os.49461.1.S1_at--459--5571Chr05:23579549..23579573 (25 bp)
GAGAAAACTCCGTGGACGCCGGTAG
LOC_Os05g40280
Os.49461.1.S1_at--131--8071Chr05:23579536..23579560 (25 bp)
GGACGCCGGTAGTAATTAGTTCTAT
LOC_Os05g40280
Os.49461.1.S1_at--1125--7111Chr05:23579452..23579476 (25 bp)
GTCAGGTCATCCTTATTGATCTTTT
LOC_Os05g40280
Os.49461.1.S1_at--1050--5651Chr05:23579148..23579172 (25 bp)
GACATCGACGAACATTTACATTTTT
LOC_Os05g40280
Target Sequence 
GAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGC
TATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTA
AGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTATCAGACTTTAAATATTGGTACTCTGNTACAAGTATGCTG
CGTATTATCAATTTGCTCTCCNGTCAGGTCATCCTTATTGATCTTTTTTGTTGGCCTTTNCATTTGGTAGATTATGGGTG
NTNCACAAGACCATAANCACCCNTTTTTGNTGCAGCTACGGACAGAGTGNTCACCATCATAGGTAGGNTTANATAACNTT
GNAAAGAAATGTTGACAATTGNACACTTGNGNNCCNGGAGTCCATCTGNATTGNGCTGATTCACTGNGNTCAGCTTACAT
GATGGATGANAACAGCATTGGCTTATGNGGCAANGCNTTTTACCTGNGNCCATGGCTTNTTAAAACTGNTCTACAGACCA
GAAAGGGAAGACATCGACGAACATTTACATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis