Browse Element(s) Details


OsAffx.27255.1.S1_at

Description tigr:9633.m03754
TID=OsAffx.27255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4024011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein
LOC_Os05g40250OsAffx.4572.1.S1_at11/115+23556994..23558527hypothetical protein
LOC_Os05g40260Os.7020.1.S1_x_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40260Os.7020.2.S1_at11/115+23559560..23563730Ycf52, putative, expressed
LOC_Os05g40270Os.8786.4.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_x_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.3.S1_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40270Os.8786.1.S1_a_at11/115+23570198..23579167leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40280Os.49461.1.S1_at10/115+23579143..23583475B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27255.1.S1_at--811--6651Chr05:23553218..23553242 (25 bp)
GTTGAACCCCAGGATGACACCATTA
LOC_Os05g40240
OsAffx.27255.1.S1_at--496--7491Chr05:23553250..23553274 (25 bp)
GTGGTCGAACCTGCGTTAACTGCAA
LOC_Os05g40240
OsAffx.27255.1.S1_at--763--9571Chr05:23553291..23553315 (25 bp)
TCTTCGGCGAGGTACTGCTGTTTAA
LOC_Os05g40240
OsAffx.27255.1.S1_at--190--331Chr05:23553828..23553852 (25 bp)
ATAACCATGTCCACCAGGGCAAAGG
LOC_Os05g40240
OsAffx.27255.1.S1_at--610--8131Chr05:23553856..23553880 (25 bp)
GGACATGATTCAGGCACTTGCAGCA
LOC_Os05g40240
OsAffx.27255.1.S1_at--833--6391Chr05:23553908..23553932 (25 bp)
GATCGTTTCTGCACCATATGCATGT
LOC_Os05g40240
OsAffx.27255.1.S1_at--157--271Chr05:23553923..23553947 (25 bp)
ATATGCATGTCGTCCTTCTGTTCAG
LOC_Os05g40240
OsAffx.27255.1.S1_at--267--8911Chr05:23553958..23553982 (25 bp)
TGAGCACATTGAGCGACACCATCCA
LOC_Os05g40240
OsAffx.27255.1.S1_at--908--10771Chr05:23554020..23554044 (25 bp)
TTGTTCACGTAGATGCTTGGGCAGC
LOC_Os05g40240
OsAffx.27255.1.S1_at--671--4231Chr05:23554068..23554092 (25 bp)
CCGAGGATGTCCTTCATGGTGTTCA
LOC_Os05g40240
OsAffx.27255.1.S1_at--747--7511Chr05:23554236..23554260 (25 bp)
GTGGAGCTCTGGTTTACCCTGTCAT
LOC_Os05g40240
Target Sequence 
GTTGAACCCCAGGATGACACCATTACAAGGGCGTGGTCGAACCTGCGTTAACTGCAATCAGAAAATCGGGGAGTCTTCGG
CGAGGTACTGCTGTTTAATGTGCAAGCATAACCATGTCCACCAGGGCAAAGGGAGGGACATGATTCAGGCACTTGCAGCA
GGAAATTACTTCCAGATTCATCGCCCTGATCGTTTCTGCACCATATGCATGTCGTCCTTCTGTTCAGCTTGCTGCGCTGA
GCACATTGAGCGACACCATCCAGAAAAGGCTAACGCTCATGGCGACCAGATCATTGAGGTTGTTCACGTAGATGCTTGGG
CAGCGGTTGCGCCGTCTGTGCTAGTCCCCGAGGATGTCCTTCATGGTGTTCAGGTCGTGCATGCTGGTGGTGGAGCTCTG
GTTTACCCTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis