Browse Element(s) Details


Os.48975.1.S1_at

Description gb:AK120115.1
DB_XREF= gi:37989738
TID=Os.48975.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025M17, full insert sequence.
FL= gb:AK120115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4020010/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed
LOC_Os05g40230Os.53921.1.S1_at11/115+23549078..23550769Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g40240OsAffx.27255.1.S1_at11/115+23552521..23554408hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48975.1.S1_at--1067--8091Chr05:23522759..23522783 (25 bp)
GGACCTCCGAGGTTTTCGATGCCGA
LOC_Os05g40200
Os.48975.1.S1_at--707--4511Chr05:23522739..23522763 (25 bp)
GCCGACCTGTTGAGGCATCCGAACA
LOC_Os05g40200
Os.48975.1.S1_at--1156--591Chr05:23522674..23522698 (25 bp)
ATGCGTTGCAATTGTTCCCGACCAG
LOC_Os05g40200
Os.48975.1.S1_at--75--991Chr05:23522615..23522639 (25 bp)
AGGAGATCAGGAACTCCTCCTCGGG
LOC_Os05g40200
Os.48975.1.S1_at--716--7451Chr05:23522458..23522482 (25 bp)
GTGTCTAGTGAATCTTTTTCTGTTT
LOC_Os05g40200
Os.48975.1.S1_at--1151--151Chr05:23522397..23522421 (25 bp)
ATTATTCATTCTTCATTCTGTGCTG
LOC_Os05g40200
Os.48975.1.S1_at--272--111Chr05:23522383..23522407 (25 bp)
ATTCTGTGCTGTGATTCCTTCTCTC
LOC_Os05g40200
Os.48975.1.S1_at--907--6851Chr05:23522317..23522341 (25 bp)
GTTTGTTTAATTTCCAGTAGCTCTA
LOC_Os05g40200
Os.48975.1.S1_at--421--391Chr05:23522286..23522310 (25 bp)
ATCACTGGGTGACATGGTCCTATCA
LOC_Os05g40200
Os.48975.1.S1_at--833--7791Chr05:23522271..23522295 (25 bp)
GGTCCTATCATGTAAAACTCTTTGG
LOC_Os05g40200
Os.48975.1.S1_at--1148--3671Chr05:23522215..23522239 (25 bp)
CTTTGCCACATTCCTTTGGCTTGAA
NONE
Target Sequence 
GGACCTCCGAGGTTTTCGATGCCGACCTGTTGAGGCATCCGAACAGCGAGGATGAAATGGTTCAGATGCTCCAGCTCGCC
ATGGCATGCGTTGCAATTGTTCCCGACCAGCGGCCTCGGATGGAGGAAGTGGTAAGGAGGATTGAGGAGATCAGGAACTC
CTCCTCGGGGACGAGGTTATCCCCCGAGGACAAGCTAAAGGAGGNAGCAATNCNGATCACCTGATGGCACAGNNATNACN
NCNATGCCNNTGAGNCNNNNATAGGTTCAATAGTTTCTACCTTGAAGGTTGTTGGTAGCAATGTGTCTAGTGAATCTTTT
TCTGTTTGATTTTCTGATCATTCTTTAGTGATTCTTCTTCTTCATTATTCATTCTTCATTCTGTGCTGTGATTCCTTCTC
TCACTCNTTTTTTTTCTTGAAAGAAATGTGATGTTAGTCATTGTGTTTGTTTAATTTCCAGTAGCTCTACTGATCATCAC
TGGGTGACATGGTCCTATCATGTAAAACTCTTTGGGGTTTGTTGTATTGAATGAATGAACTTCCAGCTTTGCCACATTCC
TTTGGCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis