Browse Element(s) Details


OsAffx.6365.1.S1_at

Description tigr:9637.m01950
TID=OsAffx.6365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g224103/11pyruvate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22350OsAffx.1412.2.S1_at1/119+13504997..13507840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22360NANA9+13508239..13514349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22370OsAffx.29975.2.S1_at11/119+13518939..13521063hypothetical protein
LOC_Os09g22380NANA9+13521536..13522892hypothetical protein
LOC_Os09g22390OsAffx.17848.4.S1_x_at2/119+13526084..13527210transposon protein, putative, unclassified
LOC_Os09g22400OsAffx.17848.3.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.5.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.2.S1_x_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22410Os.18503.1.S1_s_at11/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410Os.18503.1.S1_at7/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410OsAffx.6365.1.S1_at3/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6365.1.S1_at--352--4811Chr09:13532124..13532271 (25 bp)
GCTCTGGGCCGTCATGCTTGACACA
LOC_Os09g22410
OsAffx.6365.1.S1_at--413--1391Chr09:13532675..13532699 (25 bp)
AGACTACTTCAATTTGGTTAAGACG
LOC_Os09g22410
OsAffx.6365.1.S1_at--175--9731Chr09:13532683..13532829 (25 bp)
TCAATTTGGTTAAGACGTTTCAGAA
LOC_Os09g22410
OsAffx.6365.1.S1_at--900--5471NONE
GAACTACCTGTTAAGCCTATTATTA
NONE
OsAffx.6365.1.S1_at--353--6751Chr09:13533484..13533504 (21 bp)
GTTAAGCCTATTATTACCCAGGATG
NONE
OsAffx.6365.1.S1_at--472--151Chr09:13533489..13533513 (25 bp)
ATTATTACCCAGGATGACAGCACTC
NONE
OsAffx.6365.1.S1_at--832--671Chr09:13533502..13533526 (25 bp)
ATGACAGCACTCTGATCCGACTGAA
NONE
OsAffx.6365.1.S1_at--498--5111Chr09:13533508..13533532 (25 bp)
GCACTCTGATCCGACTGAATTTCTT
NONE
OsAffx.6365.1.S1_at--20--3751Chr09:13533511..13533535 (25 bp)
CTCTGATCCGACTGAATTTCTTCCA
NONE
OsAffx.6365.1.S1_at--539--551Chr09:13533516..13533540 (25 bp)
ATCCGACTGAATTTCTTCCAGGCGG
NONE
OsAffx.6365.1.S1_at--903--1971Chr09:13533521..13533555 (25 bp)
ACTGAATTTCTTCCAGGCGGGCGCG
NONE
Target Sequence 
GCTCTGGGCCGTCATGCTTGACACAGTCGGCCCAGAGTTGCAGGGGCAGGAGGCCTCCTCACATGTACTGCCAATTAACT
TCGCTGGGCTTGCTAAGGCTGTGAAGCCAAGTGCCACAATATTTGTTGGGCAATGCTTGTTCACAGGCAATGAGACTACT
TCAATTTGGTTAAGACGTTTCAGAAAACAAAGCCGAATTTACATGTCTACACTGGTATCTCCGAAGTGCCTCGTTTTCAA
CGTCAAGAATCGTCAGATGCTCACCAATCTGAACGGCCATAGCGTTATGTTCCTTAGAGGACTACTCGTTAAGGTGTTCC
TACAAGAACTACCTGTTAAGCCTATTATTACCCAGGATGACAGCACTCTGATCCGACTGAATTTCTTCCAGGCGGGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis