Browse Element(s) Details


OsAffx.29975.2.S1_at

Description tigr:9637.m01946
TID=OsAffx.29975.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2237011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22340NANA9+13495436..13496203hypothetical protein
LOC_Os09g22350OsAffx.1412.2.S1_at1/119+13504997..13507840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22360NANA9+13508239..13514349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22370OsAffx.29975.2.S1_at11/119+13518939..13521063hypothetical protein
LOC_Os09g22380NANA9+13521536..13522892hypothetical protein
LOC_Os09g22390OsAffx.17848.4.S1_x_at2/119+13526084..13527210transposon protein, putative, unclassified
LOC_Os09g22400OsAffx.17848.3.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.5.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.2.S1_x_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22410Os.18503.1.S1_s_at11/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410Os.18503.1.S1_at7/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410OsAffx.6365.1.S1_at3/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29975.2.S1_at--578--9211Chr09:13519564..13519588 (25 bp)
TCCACCTGCTAGTGACGCCGAAGCG
LOC_Os09g22370
OsAffx.29975.2.S1_at--243--8391Chr09:13519504..13519528 (25 bp)
GGCGAACGTCTCTCAGGACGAACGG
LOC_Os09g22370
OsAffx.29975.2.S1_at--1078--2571Chr09:13519500..13519524 (25 bp)
AACGTCTCTCAGGACGAACGGGTTG
LOC_Os09g22370
OsAffx.29975.2.S1_at--917--4151Chr09:13519463..13519487 (25 bp)
CGCCAGCTCGCCAGTGGGAAGGGAA
LOC_Os09g22370
OsAffx.29975.2.S1_at--83--1471Chr09:13519123..13519147 (25 bp)
AGAAGTCTTCCTTTGAAAGGCTGGA
LOC_Os09g22370
OsAffx.29975.2.S1_at--498--3911Chr09:13519103..13519127 (25 bp)
CTGGATGGTTATCGGCTTCGGCTCC
LOC_Os09g22370
OsAffx.29975.2.S1_at--240--5131Chr09:13519010..13519034 (25 bp)
GCAAATGCGGAGAACAAGTCCCTGA
LOC_Os09g22370
OsAffx.29975.2.S1_at--98--7651Chr09:13518982..13519006 (25 bp)
GGGAGAAGAAGTCCCTCTGTGCCAA
LOC_Os09g22370
OsAffx.29975.2.S1_at--377--5371Chr09:13518978..13519002 (25 bp)
GAAGAAGTCCCTCTGTGCCAAACTG
LOC_Os09g22370
OsAffx.29975.2.S1_at--394--2851Chr09:13518974..13518998 (25 bp)
AAGTCCCTCTGTGCCAAACTGGAGT
LOC_Os09g22370
OsAffx.29975.2.S1_at--844--9311Chr09:13518971..13518995 (25 bp)
TCCCTCTGTGCCAAACTGGAGTCGG
LOC_Os09g22370
Target Sequence 
TCCACCTGCTAGTGACGCCGAAGCGGCAACAGGCGGGAGTGCTTCGGCGCCGGCGGCCGGGGCGAACGTCTCTCAGGACG
AACGGGTTGAAGCGATTCCTTCGCCAGCTCGCCAGTGGGAAGGGAAGGCTTCGGCGGTCGAAGCGACTATGTCAGACGTG
ACGCTTACCGCCCCGTACTTCGTTCCCGCCGATTTCGCCACTCGGCCGGAGATCGCCCCTTTTGTGGATGGGGTGTGCCA
AGTTATCGCGCCCTCCGAAGGCCTTGGTCTCTTCACCGAGATGAACGAGTTCGGCGAAAGCTGTGCAGCTGTGGAGAGCT
TGTCCGTTCGGGGTCTTGCCGCGCACCTGAGTGCGAAGAAGTCTTCCTTTGAAAGGCTGGATGGTTATCGGCTTCGGCTC
CGGAAGGCCAAGGACGACCTTCGCCACAAGGAGGACAAGAGGCGCGTCGTGGCGGACACCATGAGGAAGGCAAATGCGGA
GAACAAGTCCCTGATGGGGGAGAAGAAGTCCCTCTGTGCCAAACTGGAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29975.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis