Browse Element(s) Details


OsAffx.6361.1.S1_at

Description tigr:9637.m01885
TID=OsAffx.6361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2179011/11hypothetical protein
LOC_Os09g224202/11hypothetical protein
LOC_Os02g387201/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein
LOC_Os09g21800OsAffx.17836.1.S1_at10/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800OsAffx.2922.1.S1_at2/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.50253.2.S1_x_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.22699.1.S1_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21810OsAffx.17837.1.S1_at9/119+13215138..13220757hypothetical protein
LOC_Os09g21810OsAffx.6362.1.S1_at3/119+13215138..13220757hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6361.1.S1_at--58--3353Chr09:13537141..13537165 (25 bp)
CACGATGGCTTGCTGTACGTTCTTG
LOC_Os09g22420
OsAffx.6361.1.S1_at--23--8771Chr09:13194323..13194347 (25 bp)
TGTATGATCCATGTAACCACGCCGA
LOC_Os09g21790
OsAffx.6361.1.S1_at--201--1711Chr09:13194308..13194332 (25 bp)
ACCACGCCGATAATTTTAGACTTCT
LOC_Os09g21790
OsAffx.6361.1.S1_at--310--5691Chr09:13194290..13194314 (25 bp)
GACTTCTTGGTAAGCCTGACAACTT
LOC_Os09g21790
OsAffx.6361.1.S1_at--402--5612Chr09:13194273..13194297 (25 bp)
GACAACTTTGGTATTGACCACCAAG
LOC_Os09g21790
OsAffx.6361.1.S1_at--472--8471Chr09:13194184..13194208 (25 bp)
TGGCGCACCTGTCCATGTCGCTAAG
LOC_Os09g21790
OsAffx.6361.1.S1_at--40--3871Chr09:13194014..13194038 (25 bp)
CTGAGACCGTCCATGTTGATCTTAT
LOC_Os09g21790
OsAffx.6361.1.S1_at--714--6651Chr09:13194000..13194024 (25 bp)
GTTGATCTTATTGTCCGTGATGGTG
LOC_Os09g21790
OsAffx.6361.1.S1_at--489--7211Chr09:13193956..13193980 (25 bp)
GTCGTACTCACCGTCTAGCATAAAG
LOC_Os09g21790
OsAffx.6361.1.S1_at--518--5351Chr09:13193932..13193956 (25 bp)
GAAGATCACCTCTAGTATGAATATT
LOC_Os09g21790
OsAffx.6361.1.S1_at--1130--10231Chr09:13193909..13193933 (25 bp)
TTTGGTCATATGGAATTGGGCGGCA
LOC_Os09g21790
Target Sequence 
CACGATGGCTTGCTGTACGTTCTTGGTGGAGATGGGAAGCTGGCGGTGTATGATCCATGTAACCACGCCGATAATTTTAG
ACTTCTTGGTAAGCCTGACAACTTTGGTATTGACCACCAAGAAGTTGACAGCCACCTCTTCGAGTCGGACCAAGGTGAGC
TCATGGCTGTCCTCGTCGGCTACAATGGCGCACCTGTCCATGTCGCTAAGCTCAATGAGGCGACGATGGAGTGGGACAAG
TTGGAGACCTTGGAAGGACGTGCGCTGTTCACGGGAACATACACAACAATGATGAGGAAGACTAGGTTCAAATCGATGCA
AAACAAGGTTTTCCTTCCCAGGTTGTATGAGTGGCCTGAGACCGTCCATGTTGATCTTATTGTCCGTGATGGTGAAGCAG
CATTTGTACCAAAGTCGTACTCACCGTCTAGCATAAAGAAGATCACCTCTAGTATGAATATTTGGTCATATGGAATTGGG
CGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis