Browse Element(s) Details


OsAffx.17837.1.S1_at

Description tigr:9637.m01887
TID=OsAffx.17837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g218109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein
LOC_Os09g21800OsAffx.17836.1.S1_at10/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800OsAffx.2922.1.S1_at2/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.50253.2.S1_x_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.22699.1.S1_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21810OsAffx.17837.1.S1_at9/119+13215138..13220757hypothetical protein
LOC_Os09g21810OsAffx.6362.1.S1_at3/119+13215138..13220757hypothetical protein
LOC_Os09g21820Os.45957.4.S1_x_at5/119+13223484..13227710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21830NANA9+13228306..13228713expressed protein
LOC_Os09g21840NANA9+13229087..13233448retrotransposon protein, putative, unclassified
LOC_Os09g21850NANA9+13234205..13238004retrotransposon protein, putative, unclassified
LOC_Os09g21860NANA9+13239701..13244215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21870Os.46314.2.S1_x_at1/119+13244471..13246756retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17837.1.S1_at--420--7031NONE
GTACACCGCCGGTTCAAGTGAAAAG
NONE
OsAffx.17837.1.S1_at--319--9691Chr09:13218110..13218134 (25 bp)
TCACAGGCCTGTGTTCACTGAGGAT
LOC_Os09g21810
OsAffx.17837.1.S1_at--401--3671Chr09:13217783..13218074 (25 bp)
CTTTAATGCTAGACTTCCTCAGACC
LOC_Os09g21810
OsAffx.17837.1.S1_at--832--9251Chr09:13217768..13217792 (25 bp)
TCCTCAGACCCATGTGCTTTGTGAA
LOC_Os09g21810
OsAffx.17837.1.S1_at--719--4112Chr09:13217529..13217550 (22 bp)
CGAAGGCAGTGGTCTTTTGGTCTTA
LOC_Os09g21810
OsAffx.17837.1.S1_at--190--10252Chr09:13217514..13217538 (25 bp)
TTTGGTCTTATTTCTTGGTCTCTTC
LOC_Os09g21810
OsAffx.17837.1.S1_at--819--8591Chr09:13217499..13217523 (25 bp)
TGGTCTCTTCTTTTCATGCTCATCA
LOC_Os09g21810
OsAffx.17837.1.S1_at--586--1551Chr09:13216840..13216864 (25 bp)
AGCTTCTGCTTTGCTTATGTACGCA
LOC_Os09g21810
OsAffx.17837.1.S1_at--949--10051NONE
TAGTATGTTCTTCGACTCATGGTTC
NONE
OsAffx.17837.1.S1_at--665--5711Chr09:13216263..13216325 (25 bp)
GACTCATGGTTCTTCATTCGTTACA
LOC_Os09g21810
OsAffx.17837.1.S1_at--882--6511Chr09:13216237..13216261 (25 bp)
GATATTGCCCTGTTCTAAGCATGGT
LOC_Os09g21810
Target Sequence 
GTACACCGCCGGTTCAAGTGAAAAGGCTGATGACTGGAGGTGTGATTCTGCTTGTCGGTTGAGGGAAGAATTCACAGGCC
TGTGTTCACTGAGGATATCTTCTCAACCTATTGTTTCCACCGATCATCGATCTTTAATGCTAGACTTCCTCAGACCCATG
TGCTTTGTGAATACGAAGGCAGTGGTCTTTTGGTCTTATTTCTTGGTCTCTTCTTTTCATGCTCATCAGAACTGGGAGAG
ACAGGATGTTTTAGGGGTTTTCCAAGTCTCTGAAATGGAGCAGCAGGTGTGGTATTATCATGGGTATCTAGAAATGATCA
GCTTCTGCTTTGCTTATGTACGCAGCCAGAGAAATATCTTGTTTCTTCAGATAAGAATATCATTGTTGCTGCATGGTTTG
TGTGACCTGATTAGTATGTTCTTCGACTCATGGTTCTTCATTCGTTACATGATATTGCCCTGTTCTAAGCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis