Browse Element(s) Details


OsAffx.2922.1.S1_at

Description tigr:9630.m03854
TID=OsAffx.2922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3998011/11hypothetical protein
LOC_Os09g218002/11F-box domain containing protein
LOC_Os09g216301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2922.1.S1_at--395--9871Chr02:24170690..24170714 (25 bp)
TACAGCATTTATTGAGGCAGCACTA
LOC_Os02g39980
OsAffx.2922.1.S1_at--839--10211Chr02:24170699..24170723 (25 bp)
TATTGAGGCAGCACTAGCGCGGCAC
LOC_Os02g39980
OsAffx.2922.1.S1_at--820--9991Chr02:24170713..24170737 (25 bp)
TAGCGCGGCACGTCGCATTTAATGC
LOC_Os02g39980
OsAffx.2922.1.S1_at--241--9771Chr02:24170732..24170756 (25 bp)
TAATGCGATGTGTAGGCGCACTAAC
LOC_Os02g39980
OsAffx.2922.1.S1_at--72--891Chr02:24170745..24170769 (25 bp)
AGGCGCACTAACTGGCCACTTGTGG
LOC_Os02g39980
OsAffx.2922.1.S1_at--838--3311Chr02:24170761..24170785 (25 bp)
CACTTGTGGCCGGAATGACCGATGT
LOC_Os02g39980
OsAffx.2922.1.S1_at--41--9174Chr02:24170846..24170870 (25 bp)
TGCCCGTCTAATCGCCATTAATGAG
LOC_Os02g39980
OsAffx.2922.1.S1_at--594--10392Chr09:13204589..13204613 (25 bp)
TTTTGCCTTGCATTTGAGCTCGGAC
LOC_Os09g21800
OsAffx.2922.1.S1_at--292--10271Chr02:24170888..24170912 (25 bp)
TTTGAGCTCGGACCGGTTCTTCTTA
LOC_Os02g39980
OsAffx.2922.1.S1_at--285--7891Chr02:24170902..24171003 (25 bp)
GGTTCTTCTTACACCGGCGTCTGCC
LOC_Os02g39980
OsAffx.2922.1.S1_at--451--7072Chr09:13204754..13204778 (25 bp)
GTAAGGCGCGCGTGGCTCCACACGT
LOC_Os09g21800
Target Sequence 
TACAGCATTTATTGAGGCAGCACTAGCGCGGCACGTCGCATTTAATGCGATGTGTAGGCGCACTAACTGGCCACTTGTGG
CCGGAATGACCGATGTGATGGCGGTCAGGGAGCCCTGCGCATGCACCTGTTGCTTGAAGGGGACGTGGCCTGCGGCTGCC
CGTCTAATCGCCATTAATGAGGGGATTTTTGCCTTGCATTTGAGCTCGGACCGGTTCTTCTTACACCGGCGTCTGCCCGT
GACGCTCGGCGTGATGGGATGGGCCCATGCAGCGGTAAGGCGCGCGTGGCTCCACACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis