Browse Element(s) Details


Os.52383.1.S1_at

Description gb:AK066756.1
DB_XREF= gi:32976774
TID=Os.52383.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075K23, full insert sequence.
FL= gb:AK066756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3995011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39910Os.27139.2.S1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910Os.27139.1.A1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910OsAffx.1564.1.A1_x_at2/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52383.1.S1_at--791--5171Chr02:24156290..24156314 (25 bp)
GCAATGGCAATCTTCAGCTATGGCA
LOC_Os02g39950
Os.52383.1.S1_at--882--2571Chr02:24156348..24156599 (25 bp)
AACGTGCAGCAACTCATGTTTGTGA
LOC_Os02g39950
Os.52383.1.S1_at--363--10391Chr02:24156632..24156656 (25 bp)
TTTTCCTTGTGTTCGATGCAAACCG
LOC_Os02g39950
Os.52383.1.S1_at--931--271Chr02:24156647..24156671 (25 bp)
ATGCAAACCGGGATGGGAGCCTTAG
LOC_Os02g39950
Os.52383.1.S1_at--1081--8071Chr02:24156662..24156686 (25 bp)
GGAGCCTTAGCGCAGATGAGTTCTT
LOC_Os02g39950
Os.52383.1.S1_at--323--5571Chr02:24156706..24156730 (25 bp)
GAAAGTGATATTCGCCAGCCAGCTT
LOC_Os02g39950
Os.52383.1.S1_at--939--4351Chr02:24156720..24156744 (25 bp)
CCAGCCAGCTTCTTCAGGTTTAATG
LOC_Os02g39950
Os.52383.1.S1_at--389--8071Chr02:24156967..24156991 (25 bp)
GGAGCGAAAACGACCACCCACTGGA
LOC_Os02g39950
Os.52383.1.S1_at--324--1811Chr02:24156982..24157006 (25 bp)
ACCCACTGGAGTTCTGCAAACACGA
LOC_Os02g39950
Os.52383.1.S1_at--337--2251Chr02:24157060..24157084 (25 bp)
AAATAACATGTTTCGCACTAAGCCC
LOC_Os02g39950
Os.52383.1.S1_at--1152--2991Chr02:24157122..24157146 (25 bp)
AATGAACCTATGACATGGAACCTCG
LOC_Os02g39950
Target Sequence 
GCAATGGCAATCTTCAGCTATGGCAAAGTAAACGGTTTGCTGACCAAGCAGGATCTAAAACGTGCAGCAACTCATGTTTG
TGAAGTGGACTTGACTGATAAAGTGGTGGACGTCATTTTCCTTGTGTTCGATGCAAACCGGGATGGGAGCCTTAGCGCAG
ATGAGTTCTTGAGGGCATTGCAAAGACGAGAAAGTGATATTCGCCAGCCAGCTTCTTCAGGTTTAATGGGAGTATTTACC
TGTTTGTTGAACTGTACAAAGTGTTCTCTTCAGCAGACTGTGATCTAGTGCTGGGGAGCGAAAACGACCACCCACTGGAG
TTCTGCAAACACGATTTTGCTGTNAATAGTCTTGCTTATCAAAGTTNCCGAAACATGTAGCAGCTGCAAATAACATGTTT
CGCACTAAGCCCAANGCTTCGCTGACAGAACTCTACTNCACTAATGTAAAATGAACCTATGACATGGAACCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis