Browse Element(s) Details


OsAffx.1564.1.A1_x_at

Description gb:NM_185610.1
DB_XREF= gi:34898305
GEN=P0702F05.33
TID=OsAffx.1564.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protien~similar to Oryza sativa chromosome 4, OSJNBa0029H02.7 (P0702F05.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0648011/11Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os02g399102/11K+ channel tetramerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06450Os.33229.1.S1_at11/116+3034413..3038391U-box domain containing protein, expressed
LOC_Os06g06460Os.10246.3.S1_at11/116+3039364..3040035Histone H3, putative, expressed
LOC_Os06g06460Os.10246.4.S1_x_at4/116+3039364..3040035Histone H3, putative, expressed
LOC_Os06g06470Os.55630.1.S1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.1.A1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.2.A1_x_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06480OsAffx.1564.1.A1_x_at11/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.55138.1.S1_x_at4/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.28979.1.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480OsAffx.10665.2.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.10246.4.S1_x_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490Os.11376.1.S1_at11/116+3050248..3054690U-box domain containing protein, expressed
LOC_Os06g06510Os.10246.4.S1_x_at10/116+3055094..3055805Histone H3, putative, expressed
LOC_Os06g06520Os.4346.1.S1_at11/116+3056084..3058017GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530Os.44766.1.S1_at11/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_x_at10/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_at9/116+3059008..3062607expressed protein
LOC_Os06g06540OsAffx.27472.1.S1_x_at11/116+3066710..3067738AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008076cellular_componentvoltage-gated potassium channel complex
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0005249molecular_functionvoltage-gated potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1564.1.A1_x_at--37--9474Chr08:10278502..10278526 (25 bp)
TCTGGGACTGCACCACCGGCGAGCA
NONE
OsAffx.1564.1.A1_x_at--600--10575Chr08:10278537..10278561 (25 bp)
TTCTACGAGCCGCCGGGCTGTGCAC
NONE
OsAffx.1564.1.A1_x_at--211--5753Chr08:10278591..10278615 (25 bp)
GACGGCACGAGCACGCTCATGGCAG
NONE
OsAffx.1564.1.A1_x_at--344--5094Chr08:10278601..10278625 (25 bp)
GCACGCTCATGGCAGCGACCATGTT
NONE
OsAffx.1564.1.A1_x_at--809--1934Chr08:10278629..10278653 (25 bp)
ACGGACAGACACCTCCTTCATCATC
NONE
OsAffx.1564.1.A1_x_at--174--574Chr08:10278651..10278675 (25 bp)
ATCCTGCTGGACTTCCGGGACAAGA
NONE
OsAffx.1564.1.A1_x_at--199--9693Chr08:10278896..10278920 (25 bp)
TCACGCAAGTCTGCCACCACGCCTG
NONE
OsAffx.1564.1.A1_x_at--465--3375Chr08:10278910..10278934 (25 bp)
CACCACGCCTGCTCGAGAGAGGAGA
NONE
OsAffx.1564.1.A1_x_at--226--1839Chr08:10278914..10278938 (25 bp)
ACGCCTGCTCGAGAGAGGAGAGAAA
NONE
OsAffx.1564.1.A1_x_at--191--2756Chr08:10278948..10278972 (25 bp)
AAGAAAGGATGTGGGGCCTACACCG
NONE
OsAffx.1564.1.A1_x_at--62--4751Chr06:3047617..3047641 (25 bp)
GCTGAGCCGTCCAAGCTCGGGCCAG
LOC_Os06g06480
Target Sequence 
TCTGGGACTGCACCACCGGCGAGCAGGCCGACTTCTTCTACGAGCCGCCGGGCTGTGCACTCGGCGACGCCGACAAGCTC
CAGTGNCTCGACGGCACGAGCACGCTCATGGCAGCGACCATGTTCCNACGGACAGACACCTCCTTCATCATCCTGCTGGA
CTTCCGGGACAAGAAGAACGTGGCCTGGTNGTGGTCCGACGTCGGCACGCCGGCGTCGCTGGAGGACAAGAACGTGCTNC
ACGCCATCGCNATGGAGGACGGGCGGTGCGCGCGCCCCCTCTCCCCCGCTGCCGTGCCGCGCGCCGCTACTCTCCGCCGN
CGAGCTCGCCATCGCGTCGGCCGTCTCTCTCCCTCTCTCCAGCGCCGNCGCCCCCTGCTCCGCCGCCGGCCGCCTCACGC
AAGTCTGCCACCACGCCTGCTCGAGAGAGGAGAGAAAGAAGAGAAAAAGAAAGGATGTGGGGCCTACACCGCCCCGCCGC
CGCCTCGCCNTGGCTGAGCCGTCCAAGCTCGGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1564.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis