Browse Element(s) Details

Os.4346.1.S1_at

Description

gb:AK073443.1
DB_XREF= gi:32983466
TID=Os.4346.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU075322(C11109),D22430(C11109) correspond to a region of the predicted gene.~Similar to Medicago sativa early nodule-specific protein (ENOD8) gene, complete cds.(L18899) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044K03, full insert sequence.
FL= gb:AK073443.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06520	11/11	GDSL-like Lipase/Acylhydrolase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06450	Os.33229.1.S1_at	11/11	6	+	3034413..3038391	U-box domain containing protein, expressed
LOC_Os06g06460	Os.10246.3.S1_at	11/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06460	Os.10246.4.S1_x_at	4/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06470	Os.55630.1.S1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.1.A1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.2.A1_x_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06480	OsAffx.1564.1.A1_x_at	11/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.55138.1.S1_x_at	4/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.28979.1.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	OsAffx.10665.2.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.10246.4.S1_x_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490	Os.11376.1.S1_at	11/11	6	+	3050248..3054690	U-box domain containing protein, expressed
LOC_Os06g06510	Os.10246.4.S1_x_at	10/11	6	+	3055094..3055805	Histone H3, putative, expressed
LOC_Os06g06520	Os.4346.1.S1_at	11/11	6	+	3056084..3058017	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530	Os.44766.1.S1_at	11/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_x_at	10/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_at	9/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06540	OsAffx.27472.1.S1_x_at	11/11	6	+	3066710..3067738	AP2 domain containing protein
LOC_Os06g06550	Os.44762.1.S1_at	11/11	6	+	3073389..3076782	expressed protein
LOC_Os06g06560	Os.12725.1.S1_at	11/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560	OsAffx.24317.1.S1_x_at	2/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016789	molecular_function	carboxylic ester hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4346.1.S1_at--377--385	1	Chr06:3056741..3056765 (25 bp)	CTGCAGGATGCATCTATTGTGTATC	LOC_Os06g06520
Os.4346.1.S1_at--128--241	1	Chr06:3056711..3056735 (25 bp)	AAACACGCTGTGACGCTCGAGCTGT	LOC_Os06g06520
Os.4346.1.S1_at--961--877	1	Chr06:3056689..3056713 (25 bp)	TGTTTCGCCATCCTAAAGCTCATGG	LOC_Os06g06520
Os.4346.1.S1_at--55--865	1	Chr06:3056545..3056569 (25 bp)	TGGGACTAAGGCTTGCTGCGGATAT	LOC_Os06g06520
Os.4346.1.S1_at--690--757	2	Chr06:3039004..3039027 (24 bp)	GGGCTTACAATTTCAACCCAGATGT	NONE
Os.4346.1.S1_at--75--475	1	Chr06:3056467..3056491 (25 bp)	GCTGAATGGCCAAACGGTAACCGCA	LOC_Os06g06520
Os.4346.1.S1_at--847--783	1	Chr06:3056452..3056476 (25 bp)	GGTAACCGCAAAAGCTTGTGCTGAT	LOC_Os06g06520
Os.4346.1.S1_at--262--731	1	Chr06:3056435..3056459 (25 bp)	GTGCTGATCCACAGAACTACGTGAG	LOC_Os06g06520
Os.4346.1.S1_at--760--153	1	Chr06:3056368..3056392 (25 bp)	AGCATCTTCCTTGATGAGCGGCTCA	LOC_Os06g06520
Os.4346.1.S1_at--692--357	1	Chr06:3056339..3056363 (25 bp)	CATATCCACCTTTTGATCTTTCCAA	LOC_Os06g06520
Os.4346.1.S1_at--656--179	1	Chr06:3056098..3056122 (25 bp)	ACTACGGTACCGAGACTTGAATTGC	LOC_Os06g06520

Target Sequence

CTGCAGGATGCATCTATTGTGTATCTTGACAAACACGCTGTGACGCTCGAGCTGTTTCGCCATCCTAAAGCTCATGGGCT
GAAGTATGGGACTAAGGCTTGCTGCGGATATGGTGATGGGGCTTACAATTTCAACCCAGATGTGTACTGTGGAAGCAGCA
AATTGCTGAATGGCCAAACGGTAACCGCAAAAGCTTGTGCTGATCCACAGAACTACGTGAGCTGGGATGGAATCCATGCG
ACAGAAGCTGCAAACAAGATCATAGCATCTTCCTTGATGAGCGGCTCATATTCATATCCACCTTTTGATCTTTCCAAACT
TTGCCACCTACAGCCCATAGCATAATCACAGCACCAATCTAGTCATACTTAGTTGCTGAAACCAGAATATGACAGGAAAG
CACATCTTCTGGAAAAGAGATGTTGTAAATAGTATGAAAGTCTCAGTAGTCAGTAGTACATAAAGAGGTTTGATATTCAA
ACCTTCAACTAAGAATAAAATCATGTTTATTGTATATCCTACTAATACACAGTACTACGGTACCGAGACTTGAATTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis