Browse Element(s) Details

Os.33229.1.S1_at

Description

gb:AK101286.1
DB_XREF= gi:32986495
TID=Os.33229.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) sti (stress inducible protein)-like protein (P0702F05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033F04, full insert sequence.
FL= gb:AK101286.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06450	11/11	U-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06450	Os.33229.1.S1_at	11/11	6	+	3034413..3038391	U-box domain containing protein, expressed
LOC_Os06g06460	Os.10246.3.S1_at	11/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06460	Os.10246.4.S1_x_at	4/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06470	Os.55630.1.S1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.1.A1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.2.A1_x_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06480	OsAffx.1564.1.A1_x_at	11/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.55138.1.S1_x_at	4/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.28979.1.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	OsAffx.10665.2.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.10246.4.S1_x_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490	Os.11376.1.S1_at	11/11	6	+	3050248..3054690	U-box domain containing protein, expressed
LOC_Os06g06510	Os.10246.4.S1_x_at	10/11	6	+	3055094..3055805	Histone H3, putative, expressed
LOC_Os06g06520	Os.4346.1.S1_at	11/11	6	+	3056084..3058017	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530	Os.44766.1.S1_at	11/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_x_at	10/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_at	9/11	6	+	3059008..3062607	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006950	biological_process	response to stress

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.33229.1.S1_at--61--243	1	Chr06:3037675..3037699 (25 bp)	AAAACTTACGATGCAGCGCGATGTC	LOC_Os06g06450
Os.33229.1.S1_at--461--463	1	Chr06:3037692..3037716 (25 bp)	GCGATGTCGTCACTGTGGAGCTTAA	LOC_Os06g06450
Os.33229.1.S1_at--1--1023	1	Chr06:3037774..3037798 (25 bp)	TATTGAACGGCTTCTGTCGATCCAA	LOC_Os06g06450
Os.33229.1.S1_at--26--113	1	Chr06:3037802..3037826 (25 bp)	AGTGAACCTCCACATTTCATCTGTC	LOC_Os06g06450
Os.33229.1.S1_at--149--67	1	Chr06:3037996..3038020 (25 bp)	ATGAATGATCCTCACTTTGCAGCGG	LOC_Os06g06450
Os.33229.1.S1_at--1016--67	1	Chr06:3038072..3038096 (25 bp)	ATGACACATCTCCAATGACCAACGA	LOC_Os06g06450
Os.33229.1.S1_at--224--585	1	Chr06:3038088..3038112 (25 bp)	GACCAACGAGCGACTTCAACATAAA	LOC_Os06g06450
Os.33229.1.S1_at--117--949	1	Chr06:3038140..3038164 (25 bp)	TCTGCTATTCGGGAGTGGCACCAAC	LOC_Os06g06450
Os.33229.1.S1_at--563--239	1	Chr06:3038169..3038193 (25 bp)	AAACATGAGGCATACTTCTCCGCGG	LOC_Os06g06450
Os.33229.1.S1_at--439--313	1	Chr06:3038244..3038268 (25 bp)	AATTTAGCCGCAGTTTTGATCCTTG	LOC_Os06g06450
Os.33229.1.S1_at--578--565	1	Chr06:3038291..3038315 (25 bp)	GACATGGCTAGATCGCAATCCACAT	LOC_Os06g06450

Target Sequence

AAAACTTACGATGCAGCGCGATGTCGTCACTGTGGAGCTTAAGTCAGCCAAGGAGCGTAACGCTAATCTAGAACTGCAAC
TCTCAGAACAGATAGGCCGTATTGAACGGCTTCTGTCGATCCAAAACAGTGAACCTCCACATTTCATCTGTCCTATATCT
CAGGAAGTCATGAATGATCCTCACTTTGCAGCGGATGGACACACCTATGAAGCTGAGCATATCAGGAAATGGCTCAACGA
TGGACATGACACATCTCCAATGACCAACGAGCGACTTCAACATAAAAAACTCACTCCCAATCACGCACTGCGCTCTGCTA
TTCGGGAGTGGCACCAACACCGAAACATGAGGCATACTTCTCCGCGGCGCCAACAGCTTTTTTTGTGAATTTGTGTGAAG
CAAGTTGTAACTATGAAAATTTAGCCGCAGTTTTGATCCTTGCTACAGAGAGAGTGCTTGCCGCGACATGGCTAGATCGC
AATCCACAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis