Browse Element(s) Details


Os.10246.3.S1_at

Description gb:CF339453
DB_XREF= gi:33827286
DB_XREF=RCL1--04-O13.g1
CLONE=RCL1--04-O13
TID=Os.10246.3
CNT=31
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H3 (P0505D12.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0646011/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06450Os.33229.1.S1_at11/116+3034413..3038391U-box domain containing protein, expressed
LOC_Os06g06460Os.10246.3.S1_at11/116+3039364..3040035Histone H3, putative, expressed
LOC_Os06g06460Os.10246.4.S1_x_at4/116+3039364..3040035Histone H3, putative, expressed
LOC_Os06g06470Os.55630.1.S1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.1.A1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.2.A1_x_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06480OsAffx.1564.1.A1_x_at11/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.55138.1.S1_x_at4/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.28979.1.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480OsAffx.10665.2.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.10246.4.S1_x_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490Os.11376.1.S1_at11/116+3050248..3054690U-box domain containing protein, expressed
LOC_Os06g06510Os.10246.4.S1_x_at10/116+3055094..3055805Histone H3, putative, expressed
LOC_Os06g06520Os.4346.1.S1_at11/116+3056084..3058017GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530Os.44766.1.S1_at11/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_x_at10/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_at9/116+3059008..3062607expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10246.3.S1_at--587--851Chr06:3039513..3039537 (25 bp)
AGGCGATCCGCCCTCCTTTGGTTCT
LOC_Os06g06460
Os.10246.3.S1_at--995--4291Chr06:3039499..3039523 (25 bp)
CCTTTGGTTCTTGCTTGGTTCGTAG
LOC_Os06g06460
Os.10246.3.S1_at--990--9051Chr06:3039488..3039512 (25 bp)
TGCTTGGTTCGTAGGGACTTGTCAT
LOC_Os06g06460
Os.10246.3.S1_at--747--3511Chr06:3039466..3039490 (25 bp)
CATGTTCTACCAGTTCTTGTTAATT
LOC_Os06g06460
Os.10246.3.S1_at--952--6751Chr06:3039448..3039472 (25 bp)
GTTAATTATTAGATCCTTGCCTTGT
LOC_Os06g06460
Os.10246.3.S1_at--377--10211Chr06:3039442..3039466 (25 bp)
TATTAGATCCTTGCCTTGTCATGTC
LOC_Os06g06460
Os.10246.3.S1_at--439--6371Chr06:3039437..3039461 (25 bp)
GATCCTTGCCTTGTCATGTCGTAGT
LOC_Os06g06460
Os.10246.3.S1_at--714--3511Chr06:3039423..3039447 (25 bp)
CATGTCGTAGTCTTTGATTCTTAGT
LOC_Os06g06460
Os.10246.3.S1_at--366--4031Chr06:3039418..3039442 (25 bp)
CGTAGTCTTTGATTCTTAGTTGCAA
LOC_Os06g06460
Os.10246.3.S1_at--863--10431Chr06:3039403..3039427 (25 bp)
TTAGTTGCAATGTAACCGCTGGTTA
LOC_Os06g06460
Os.10246.3.S1_at--235--3171Chr06:3039396..3039420 (25 bp)
CAATGTAACCGCTGGTTATTCTGAA
LOC_Os06g06460
Target Sequence 
AGGCGATCCGCCCTCCTTTGGTTCTTGCTTGGTTCGTAGGGACTTGTCATGTTCTACCAGTTCTTGTTAATTATTAGATC
CTTGCCTTGTCATGTCGTAGTCTTTGATTCTTAGTTGCAATGTAACCGCTGGTTATTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10246.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis