Browse Element(s) Details

Os.10246.4.S1_x_at

Description

gb:CR280062
DB_XREF= gi:44666628
DB_XREF=CR280062
CLONE=p641a03p3
TID=Os.10246.4
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H3 (P0505D12.20), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06510	10/11	Histone H3, putative, expressed
LOC_Os06g06460	4/11	Histone H3, putative, expressed
LOC_Os04g53540	2/11	START domain containing protein, expressed
LOC_Os06g06480	1/11	Core histone H2A/H2B/H3/H4 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06450	Os.33229.1.S1_at	11/11	6	+	3034413..3038391	U-box domain containing protein, expressed
LOC_Os06g06460	Os.10246.3.S1_at	11/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06460	Os.10246.4.S1_x_at	4/11	6	+	3039364..3040035	Histone H3, putative, expressed
LOC_Os06g06470	Os.55630.1.S1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.1.A1_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06470	Os.10636.2.A1_x_at	11/11	6	+	3041191..3045220	U-box domain containing protein, expressed
LOC_Os06g06480	OsAffx.1564.1.A1_x_at	11/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.55138.1.S1_x_at	4/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.28979.1.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	OsAffx.10665.2.S1_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480	Os.10246.4.S1_x_at	1/11	6	+	3045566..3048172	Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490	Os.11376.1.S1_at	11/11	6	+	3050248..3054690	U-box domain containing protein, expressed
LOC_Os06g06510	Os.10246.4.S1_x_at	10/11	6	+	3055094..3055805	Histone H3, putative, expressed
LOC_Os06g06520	Os.4346.1.S1_at	11/11	6	+	3056084..3058017	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530	Os.44766.1.S1_at	11/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_x_at	10/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06530	Os.44766.2.S1_at	9/11	6	+	3059008..3062607	expressed protein
LOC_Os06g06540	OsAffx.27472.1.S1_x_at	11/11	6	+	3066710..3067738	AP2 domain containing protein
LOC_Os06g06550	Os.44762.1.S1_at	11/11	6	+	3073389..3076782	expressed protein
LOC_Os06g06560	Os.12725.1.S1_at	11/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560	OsAffx.24317.1.S1_x_at	2/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0009913	biological_process	epidermal cell differentiation
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10246.4.S1_x_at--263--739	4	Chr06:3055320..3055344 (25 bp)	GTGAGATCCGCAAGTACCAGAAGAG	LOC_Os06g06510
Os.10246.4.S1_x_at--900--797	2	Chr06:3055560..3055584 (25 bp)	GGATCCGCGGCGAGCGCGCTTAGGC	LOC_Os06g06510
Os.10246.4.S1_x_at--1040--1007	2	Chr06:3055617..3055641 (25 bp)	TAGGGACTTGTCATGTTCTACCAGT	LOC_Os06g06510
Os.10246.4.S1_x_at--1094--105	2	Chr06:3055618..3055642 (25 bp)	AGGGACTTGTCATGTTCTACCAGTT	LOC_Os06g06510
Os.10246.4.S1_x_at--68--933	1	Chr06:3055661..3055685 (25 bp)	TCGCTTTGTCATGTCGTAGTCTTAG	LOC_Os06g06510
Os.10246.4.S1_x_at--503--413	1	Chr06:3055662..3055686 (25 bp)	CGCTTTGTCATGTCGTAGTCTTAGA	LOC_Os06g06510
Os.10246.4.S1_x_at--345--369	1	Chr06:3055664..3055688 (25 bp)	CTTTGTCATGTCGTAGTCTTAGATT	LOC_Os06g06510
Os.10246.4.S1_x_at--474--305	3	Chr06:3055745..3055769 (25 bp)	AATCTGTTTTATCCCCAAATTTCTG	LOC_Os06g06510
Os.10246.4.S1_x_at--1142--385	2	Chr06:3055748..3055772 (25 bp)	CTGTTTTATCCCCAAATTTCTGTGT	LOC_Os06g06510
Os.10246.4.S1_x_at--970--877	3	Chr06:3055749..3055772 (24 bp)	TGTTTTATCCCCAAATTTCTGTGTT	LOC_Os06g06510
Os.10246.4.S1_x_at--901--1037	2	Chr06:3039253..3039375 (25 bp)	TTTTATCCCCAAATTTCTGTGTTCA	NONE

Target Sequence

GTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCC
CAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCNCTGCAGGAGGCCGCNGAGGCGTACCTCGTCGG
GCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCC
GGATCCGCGGCGAGCGCGCTTAGGCNATCNGCCCNCCTTTGGTTCTNGCTTGATTCNTAGGGACTTGTCATGTTCTACCA
GTTNNTGTTANTTATTAGATCNTCGCTTTGTCATGTCGTAGTCTTAGATTNNNNNNNNNNCTTAGTTNCNNNNNNNNNAA
TGTAANTGCTGGTTATTCTGAAATTGCAANCGAAGNAATCTGTTTTATCCCCAAATTTCTGTGTTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis