Browse Element(s) Details


OsAffx.27472.1.S1_x_at

Description gb:NM_185617.1
DB_XREF= gi:34898319
TID=OsAffx.27472.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Nicotiana tabacum mRNA for ERF1, complete cds.(D38123) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0654011/11AP2 domain containing protein
LOC_Os09g258901/11trehalose-6-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06470Os.55630.1.S1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.1.A1_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06470Os.10636.2.A1_x_at11/116+3041191..3045220U-box domain containing protein, expressed
LOC_Os06g06480OsAffx.1564.1.A1_x_at11/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.55138.1.S1_x_at4/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.28979.1.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480OsAffx.10665.2.S1_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06480Os.10246.4.S1_x_at1/116+3045566..3048172Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os06g06490Os.11376.1.S1_at11/116+3050248..3054690U-box domain containing protein, expressed
LOC_Os06g06510Os.10246.4.S1_x_at10/116+3055094..3055805Histone H3, putative, expressed
LOC_Os06g06520Os.4346.1.S1_at11/116+3056084..3058017GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530Os.44766.1.S1_at11/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_x_at10/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_at9/116+3059008..3062607expressed protein
LOC_Os06g06540OsAffx.27472.1.S1_x_at11/116+3066710..3067738AP2 domain containing protein
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27472.1.S1_x_at--440--9271Chr06:3067298..3067322 (25 bp)
TCCGGGTACGACGAGTCCAGCGACG
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--856--1851Chr06:3067305..3067329 (25 bp)
ACGACGAGTCCAGCGACGAGTCGCA
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--123--1151Chr06:3067323..3067347 (25 bp)
AGTCGCAGCTCGTCGGCTCGCCGGT
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--753--8351Chr06:3067442..3067466 (25 bp)
GGCGACGGCTTAATCTCCCCGTTCA
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--773--6751Chr06:3067462..3067486 (25 bp)
GTTCACCTGCGACGTCCTGAATTTC
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--974--3332Chr09:15534471..15534495 (24 bp)
CACCGCCCGACGAGGACATGTTCGG
LOC_Os09g25890
OsAffx.27472.1.S1_x_at--964--8351Chr06:3067514..3067538 (25 bp)
GGCGGCATCTCCTTCGGCGAGCCGA
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--244--5791Chr06:3067559..3067583 (25 bp)
GACGACGACTGCATGGCGCGCCTCG
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--661--2591Chr06:3067595..3067619 (25 bp)
AACGACGACGAGCACCCGGTGACGA
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--80--471Chr06:3067641..3067665 (25 bp)
ATCTCGGCGACCTGCCGTCGTGGAC
LOC_Os06g06540
OsAffx.27472.1.S1_x_at--1031--8011Chr06:3067666..3067690 (25 bp)
GGAGGTGGACGGCTTCTTCAGCGAC
LOC_Os06g06540
Target Sequence 
TCCGGGTACGACGAGTCCAGCGACGAGTCGCAGCTCGTCGGCTCGCCGGTCTCCGTGCTCCGCCCAATGCCGGCGCGCGC
AACGGCCAAGAAAGAGGCCAAGGAAGAAGACGACTCCGCCCCCGATATCCTCGGCATCTCCGCCGGCGACGGCTTAATCT
CCCCGTTCACCTGCGACGTCCTGAATTTCCCACCGCCCGACGAGGACATGTTCGGCGGCGGCATCTCCTTCGGCGAGCCG
ACACCGCCACCCATGGTGTTCGACGACGACTGCATGGCGCGCCTCGGCCACGCCCCCAACGACGACGAGCACCCGGTGAC
GAGCTCGTCCTTCCTCGACGGCGATCTCGGCGACCTGCCGTCGTGGACGGAGGTGGACGGCTTCTTCAGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27472.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis