Browse Element(s) Details


Os.44762.1.S1_at

Description gb:NM_185619.1
DB_XREF= gi:34898323
TID=Os.44762.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST C74734(E50712) corresponds to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) EST C74734(E50712) corresponds to a region of the predicted gene.~hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0655011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06490Os.11376.1.S1_at11/116+3050248..3054690U-box domain containing protein, expressed
LOC_Os06g06510Os.10246.4.S1_x_at10/116+3055094..3055805Histone H3, putative, expressed
LOC_Os06g06520Os.4346.1.S1_at11/116+3056084..3058017GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530Os.44766.1.S1_at11/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_x_at10/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_at9/116+3059008..3062607expressed protein
LOC_Os06g06540OsAffx.27472.1.S1_x_at11/116+3066710..3067738AP2 domain containing protein
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44762.1.S1_at--3--8131Chr06:3073956..3073980 (25 bp)
GGACTGCCTGCACGCCAGCCTTGTT
LOC_Os06g06550
Os.44762.1.S1_at--913--8351Chr06:3073729..3073753 (25 bp)
TGGCGAGGAACCTCCTGGCGCGGGA
LOC_Os06g06550
Os.44762.1.S1_at--61--1371Chr06:3073693..3073717 (25 bp)
AGAGCAAGCCGGTGACCCGCTACTT
LOC_Os06g06550
Os.44762.1.S1_at--1049--5811Chr06:3073680..3073704 (25 bp)
GACCCGCTACTTCCAACTGATGAAC
LOC_Os06g06550
Os.44762.1.S1_at--156--10671Chr06:3073670..3073694 (25 bp)
TTCCAACTGATGAACGAGCTCGTCG
LOC_Os06g06550
Os.44762.1.S1_at--270--9731Chr06:3073561..3073585 (25 bp)
TCAAGAAGATCGACGGGTACGCCAC
LOC_Os06g06550
Os.44762.1.S1_at--849--5332Chr03:22715803..22715822 (20 bp)
GAAGATCGACGGGTACGCCACCTAC
NONE
Os.44762.1.S1_at--83--3711Chr06:3073536..3073560 (25 bp)
CTACCCGTCGGTGTTCATGGCCATG
LOC_Os06g06550
Os.44762.1.S1_at--511--7751Chr06:3073527..3073551 (25 bp)
GGTGTTCATGGCCATGGACGTGCAG
LOC_Os06g06550
Os.44762.1.S1_at--8--2691Chr06:3073475..3073499 (25 bp)
AAGCGGATGAACAACTTCTTCGTCC
LOC_Os06g06550
Os.44762.1.S1_at--742--6291Chr06:3073470..3073494 (25 bp)
GATGAACAACTTCTTCGTCCGCTAC
LOC_Os06g06550
Target Sequence 
GGACTGCCTGCACGCCAGCCTTGTTCCGCCGTCGTCGGAAGCCGGCGGCGNCGCGGGAGGGGTGAAAGGCGGCAAGACGT
CGAGGATCCCGACGGCGAAGGAGCTCCGCCGCTCGGGCGTCCGTCTCGAGGCCGGCGTGGAGGACGGCNGCNCNGTGGNT
CCAGTTCAAGGAGGACGCCGCGACGCTGCGGCTGCCGGCGCTGGTGTTCGACTTCAAGCTGGCCACGGTGGCGAGGAACC
TCCTGGCGCGGGAGCTGGAGGAGCAGAGCAAGCCGGTGACCCGCTACTTCCAACTGATGAACGAGCTCGTCGAGGAGGTC
GCCGACGTGAGGATCCTCCGCCGCGCCGGCGTCGTGCGCGGCGGGTCCAGGGGCGCCGGCGAGGTGCACGAGCTCATCAA
GAAGATCGACGGGTACGCCACCTACCCGTCGGTGTTCATGGCCATGGACGTGCAGGTCGAGAAGGTGAAGGTGTTCCACG
AGAAGCGGATGAACAACTTCTTCGTCCGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis