Browse Element(s) Details


Os.12725.1.S1_at

Description gb:AF165890.1
DB_XREF= gi:5734102
TID=Os.12725.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12725 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. japonica soluble starch synthase mRNA, complete cds.
PROD=soluble starch synthase
FL= gb:AY299404.1 gb:AF165890.1 gb:D16202.1 gb:AK109458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0656011/11Soluble starch synthase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06490Os.11376.1.S1_at11/116+3050248..3054690U-box domain containing protein, expressed
LOC_Os06g06510Os.10246.4.S1_x_at10/116+3055094..3055805Histone H3, putative, expressed
LOC_Os06g06520Os.4346.1.S1_at11/116+3056084..3058017GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06530Os.44766.1.S1_at11/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_x_at10/116+3059008..3062607expressed protein
LOC_Os06g06530Os.44766.2.S1_at9/116+3059008..3062607expressed protein
LOC_Os06g06540OsAffx.27472.1.S1_x_at11/116+3066710..3067738AP2 domain containing protein
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12725.1.S1_at--930--591Chr06:3078842..3078866 (25 bp)
ATGCCGCCTCACAGTATGAACAGAT
LOC_Os06g06560
Os.12725.1.S1_at--734--9351Chr06:3078815..3078839 (25 bp)
TCGAATGGGCCTTCATGGATCAACC
LOC_Os06g06560
Os.12725.1.S1_at--6--5391Chr06:3078765..3078789 (25 bp)
GAAGCAGCGAATTTCTCCGAGGACC
LOC_Os06g06560
Os.12725.1.S1_at--40--3211Chr06:3078651..3078675 (25 bp)
CAAGGTTACCCTTGTAGGCCTGCTA
LOC_Os06g06560
Os.12725.1.S1_at--1158--9071Chr06:3078631..3078655 (25 bp)
TGCTACTTGGCCAATATGGTTCCAG
LOC_Os06g06560
Os.12725.1.S1_at--474--7911Chr06:3078614..3078638 (25 bp)
GGTTCCAGTGACCATATGCAGAGTC
LOC_Os06g06560
Os.12725.1.S1_at--678--5171Chr06:3078508..3078532 (25 bp)
GCAAGCAACCTCTCAATGCATCGAA
LOC_Os06g06560
Os.12725.1.S1_at--175--7931Chr06:3078462..3078486 (25 bp)
GGATTTAGCTCCCATCAATTACAGT
LOC_Os06g06560
Os.12725.1.S1_at--244--10731Chr06:3078426..3078450 (25 bp)
TTGCTTAATACTTTGTCGCCTGTGC
LOC_Os06g06560
Os.12725.1.S1_at--248--9331Chr06:3078411..3078435 (25 bp)
TCGCCTGTGCTGTTCTTATATTTGT
LOC_Os06g06560
Os.12725.1.S1_at--379--5391Chr06:3078316..3078340 (25 bp)
GAAGCTGTAGCTACTGCGATGTCAA
LOC_Os06g06560
Target Sequence 
ATGCCGCCTCACAGTATGAACAGATCTTCGAATGGGCCTTCATGGATCAACCATATGTCATGTAAATGGATTTGAAGGAA
GCAGCGAATTTCTCCGAGGACCCTCAATCTTCCTGTCTTTCATGAGCGGAATGAAAACTTTGTACACTACATGGAAAGGG
AACCAGTTATGCAAAGTTGCAAACGATCACTCAAGGTTACCCTTGTAGGCCTGCTACTTGGCCAATATGGTTCCAGTGAC
CATATGCAGAGTCAGGTTCAGATGAATGGCACTTGTGAGTAGTGAAGAATAAGATGAGGATGCTTGAAGCGGTTTCACAT
GTGGCTGATACCACGCAAGCAACCTCTCAATGCATCGAAATGTGAGTCTTGGAATCAATAGGATTTAGCTCCCATCAATT
ACAGTTGTACCCTTTTTTGCTTAATACTTTGTCGCCTGTGCTGTTCTTATATTTGTGTGAAGATAAATTTTAGTCCATTA
GGTAACTGTATTGTTGAGTCTTAAGGTGAAGACTAAATAGTGTTTGGAAGCTGTAGCTACTGCGATGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis