Browse Element(s) Details

Os.4355.1.S1_at

Description

gb:BI804674
DB_XREF= gi:16577378
DB_XREF=H143C01
CLONE=H143C01
TID=Os.4355.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Herpesvirus papio BRRF2 homolog gene, partial cds.(U23857) (Gene), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06610	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06560	Os.12725.1.S1_at	11/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560	OsAffx.24317.1.S1_x_at	2/11	6	+	3078060..3085809	Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570	Os.52871.1.S1_x_at	11/11	6	+	3089169..3089826	expressed protein
LOC_Os06g06580	OsAffx.27473.1.S1_at	11/11	6	+	3092919..3094988	hypothetical protein
LOC_Os06g06590	OsAffx.27474.1.S1_at	11/11	6	+	3095000..3096884	expressed protein
LOC_Os06g06600	Os.4354.1.S1_at	11/11	6	+	3103605..3106509	F-box domain containing protein, expressed
LOC_Os06g06610	Os.4355.1.S1_at	9/11	6	+	3110550..3114194	expressed protein
LOC_Os06g06620	OsAffx.4742.2.S1_s_at	11/11	6	+	3114722..3115027	hypothetical protein
LOC_Os06g06620	OsAffx.4742.1.S1_x_at	9/11	6	+	3114722..3115027	hypothetical protein
LOC_Os06g06630	NA	NA	6	+	3117179..3118435	hypothetical protein
LOC_Os06g06640	NA	NA	6	+	3118930..3119280	hypothetical protein
LOC_Os06g06650	NA	NA	6	+	3120706..3121721	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660	Os.36001.1.S1_at	11/11	6	+	3127080..3129960	expressed protein
LOC_Os06g06670	Os.32061.2.S1_x_at	11/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06670	Os.32061.1.S1_at	10/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06680	OsAffx.15289.1.S1_at	11/11	6	+	3134632..3135975	expressed protein
LOC_Os06g06690	OsAffx.27477.1.S1_at	8/11	6	+	3138201..3138653	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_at	11/11	6	+	3138824..3139219	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_s_at	11/11	6	+	3138824..3139219	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4355.1.S1_at--120--15	1	Chr06:3112866..3112890 (25 bp)	ATTAGCTGCCAGCAACCACATAGTT	LOC_Os06g06610
Os.4355.1.S1_at--82--737	1	Chr06:3112957..3112981 (25 bp)	GTGAAAATGCCACGTTCATGCTGAT	LOC_Os06g06610
Os.4355.1.S1_at--862--959	1	Chr06:3112972..3112996 (25 bp)	TCATGCTGATGAATTCCCCGACATT	LOC_Os06g06610
Os.4355.1.S1_at--831--551	1	Chr06:3113003..3113027 (25 bp)	GAAAACCGGCAACAACTTACGCAAG	LOC_Os06g06610
Os.4355.1.S1_at--1062--695	1	Chr06:3113063..3113087 (25 bp)	GTAGCAGCCATTTACTGGAGACTTA	LOC_Os06g06610
Os.4355.1.S1_at--759--647	1	NONE	GATACACGGAGCAGAACCTCTCATG	NONE
Os.4355.1.S1_at--433--543	1	NONE	GAACCTCTCATGCTGCAATGTAGAT	NONE
Os.4355.1.S1_at--919--1025	1	Chr06:3113963..3113987 (25 bp)	TTTGTTGCTTCTGATCGAATGACGC	LOC_Os06g06610
Os.4355.1.S1_at--748--579	1	Chr06:3113983..3114007 (25 bp)	GACGCAGAATTGGTTGCCTTCTTTT	LOC_Os06g06610
Os.4355.1.S1_at--105--1039	1	Chr06:3114068..3114092 (25 bp)	TTTTCCTGTTACTATGTGTTGGCCA	LOC_Os06g06610
Os.4355.1.S1_at--865--843	1	Chr06:3114088..3114112 (25 bp)	GGCCATTATGCCGTGAAGTTTACAA	LOC_Os06g06610

Target Sequence

ATTAGCTGCCAGCAACCACATAGTTGTATAATGGATGTGGCTAAGTCTGTGGGTGTGGAAGAGTGCATTAATATCTTGAC
GTACCNTTGGGGGTGAAAATGCCACGTTCATGCTGATGAATTCCCCGACATTCCTTGAGAAAACCGGCAACAACTTACGC
AAGTCTTCTGATTTGAAGGAGTGGGTCTACCTAAAAGAGTAGCAGCCATTTACTGGAGACTTATCTGACTGTATAAGAGG
AAGACAGATACACGGAGCAGAACCTCTCATGCTGCAATGTAGATGCGGTCTAGAGGAAGACAGAACTACAGGAGCCTCCA
CTTGTTCATTCGTCTCTTCAGAAATTTTTGTTGCTTCTGATCGAATGACGCAGAATTGGTTGCCTTCTTTTTGTAAAGAT
AGTAGATAGGCACATGCTCAGAAGCCAAAAGAAAGCCGTCAACTTTTTTGTTTTCCTGTTACTATGTGTTGGCCATTATG
CCGTGAAGTTTACAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis