Browse Element(s) Details

Os.32061.1.S1_at

Description

gb:AK106234.1
DB_XREF= gi:32991443
TID=Os.32061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full insert sequence.
FL= gb:AK106234.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06670	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06600	Os.4354.1.S1_at	11/11	6	+	3103605..3106509	F-box domain containing protein, expressed
LOC_Os06g06610	Os.4355.1.S1_at	9/11	6	+	3110550..3114194	expressed protein
LOC_Os06g06620	OsAffx.4742.2.S1_s_at	11/11	6	+	3114722..3115027	hypothetical protein
LOC_Os06g06620	OsAffx.4742.1.S1_x_at	9/11	6	+	3114722..3115027	hypothetical protein
LOC_Os06g06630	NA	NA	6	+	3117179..3118435	hypothetical protein
LOC_Os06g06640	NA	NA	6	+	3118930..3119280	hypothetical protein
LOC_Os06g06650	NA	NA	6	+	3120706..3121721	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660	Os.36001.1.S1_at	11/11	6	+	3127080..3129960	expressed protein
LOC_Os06g06670	Os.32061.2.S1_x_at	11/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06670	Os.32061.1.S1_at	10/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06680	OsAffx.15289.1.S1_at	11/11	6	+	3134632..3135975	expressed protein
LOC_Os06g06690	OsAffx.27477.1.S1_at	8/11	6	+	3138201..3138653	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_at	11/11	6	+	3138824..3139219	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_s_at	11/11	6	+	3138824..3139219	hypothetical protein
LOC_Os06g06710	OsAffx.27478.1.S1_at	11/11	6	+	3141027..3142989	hypothetical protein
LOC_Os06g06710	OsAffx.15289.1.S1_at	1/11	6	+	3141027..3142989	hypothetical protein
LOC_Os06g06720	Os.4365.1.S1_at	11/11	6	+	3144478..3146612	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730	Os.47447.1.S1_at	11/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730	OsAffx.10342.1.S1_x_at	2/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32061.1.S1_at--585--401	1	Chr06:3131877..3131901 (25 bp)	CGTCGCATCATTTTCCGGCGATTAA	LOC_Os06g06670
Os.32061.1.S1_at--300--49	1	Chr06:3131928..3131952 (25 bp)	ATCTGGTTCACTGGGAGGTCTGCGC	LOC_Os06g06670
Os.32061.1.S1_at--462--1009	1	Chr06:3131959..3131983 (25 bp)	TATGGAACCAGCTGTCGAGACGAAT	LOC_Os06g06670
Os.32061.1.S1_at--167--181	1	Chr06:3131998..3132022 (25 bp)	ACCCCAACTCCACTATGTGTGTTAG	LOC_Os06g06670
Os.32061.1.S1_at--710--223	1	Chr06:3132081..3132105 (25 bp)	ACAATGGTGATATTCGTTCTCCCAC	LOC_Os06g06670
Os.32061.1.S1_at--696--931	1	NONE	TCCCACCTGAGTCATTAGCTGGTTT	NONE
Os.32061.1.S1_at--1056--1085	1	Chr06:3133033..3133057 (25 bp)	TTGGTATCAACTCTTCTGTTTCCCG	LOC_Os06g06670
Os.32061.1.S1_at--898--651	1	Chr06:3133065..3133089 (25 bp)	GATATTACTGGCCATTGTGCTCTGA	LOC_Os06g06670
Os.32061.1.S1_at--125--177	1	Chr06:3133128..3133152 (25 bp)	ACCTGGCAATTGTGTGTTCTGACAT	LOC_Os06g06670
Os.32061.1.S1_at--980--567	1	Chr06:3133148..3133172 (25 bp)	GACATTTGCTGTAGTTTCTCCATCG	LOC_Os06g06670
Os.32061.1.S1_at--1080--683	1	Chr06:3133161..3133185 (25 bp)	GTTTCTCCATCGTTATCTGTGATTC	LOC_Os06g06670

Target Sequence

CGTCGCATCATTTTCCGGCGATTAACACATAATGATTTACAATGGGTTTGGATCTGGTTCACTGGGAGGTCTGCGCTCCA
TCTATGGAACCAGCTGTCGAGACGAATGGGCTTCGAACCAGACCCCAACTCCACTATGTGTGTTAGAGCAGGAACCTACG
GACGGCTGACTCCTCTGGTGACCGATCTGCCTCGCAACAATGCGACAATGGTGATATTCGTTCTCCCACCTGAGTCATTA
GCTGGTTTGGGGTTGACGTGCCCCAATGTTCATGCCGCCTAGAGGAAGACAGAAGAACTACAGGAGCAGAACCCCTGACA
GTCACTTGTTCATTCGTCCCTTCAGAAAATTACGCTGCTTCAGATCGAATGACAGAGAACTGAATGTCTTCTCTCTCTCT
CTCTCTTTGGTATCAACTCTTCTGTTTCCCGGTCATTAGATATTACTGGCCATTGTGCTCTGAAGTTCACGAACTGCATT
AAGCAACTAAGGAGAATGTGTACCTGGCAATTGTGTGTTCTGACATTTGCTGTAGTTTCTCCATCGTTATCTGTGATTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis