Browse Element(s) Details


Os.36001.1.S1_at

Description gb:AK064664.1
DB_XREF= gi:32974682
TID=Os.36001.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A12, full insert sequence.
FL= gb:AK064664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0666011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein
LOC_Os06g06680OsAffx.15289.1.S1_at11/116+3134632..3135975expressed protein
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06710OsAffx.27478.1.S1_at11/116+3141027..3142989hypothetical protein
LOC_Os06g06710OsAffx.15289.1.S1_at1/116+3141027..3142989hypothetical protein
LOC_Os06g06720Os.4365.1.S1_at11/116+3144478..3146612oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730Os.47447.1.S1_at11/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730OsAffx.10342.1.S1_x_at2/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36001.1.S1_at--853--8631Chr06:3128389..3128413 (25 bp)
TGGGCTTGTTTCGAGTTCACCGGGA
LOC_Os06g06660
Os.36001.1.S1_at--749--9631Chr06:3128405..3128429 (25 bp)
TCACCGGGAGGTCATTGTTCAATCT
LOC_Os06g06660
Os.36001.1.S1_at--384--10271Chr06:3128458..3128482 (25 bp)
TTTGCAGTGGTCTCCGATGTCATTA
LOC_Os06g06660
Os.36001.1.S1_at--445--7591Chr06:3128496..3128520 (25 bp)
GGGCTTGTTTGGACGGCTGACTCCT
LOC_Os06g06660
Os.36001.1.S1_at--1105--1271Chr06:3128558..3128582 (25 bp)
AGATCATCGTTGTCACGGCTGGGAC
LOC_Os06g06660
Os.36001.1.S1_at--1059--6351Chr06:3129599..3129623 (25 bp)
GATGCCAATGAGTTGAGATTCCCCA
LOC_Os06g06660
Os.36001.1.S1_at--247--10371Chr06:3129704..3129728 (25 bp)
TTTTTTGCTGGCTCAGACCGAATGA
LOC_Os06g06660
Os.36001.1.S1_at--518--5551Chr06:3129756..3129780 (25 bp)
GAAAGGAAACCACCATCTGTTCTGT
LOC_Os06g06660
Os.36001.1.S1_at--552--631Chr06:3129802..3129826 (25 bp)
ATGCTCTGATGTCTTGAATGCCTGA
LOC_Os06g06660
Os.36001.1.S1_at--286--5271Chr06:3129817..3129841 (25 bp)
GAATGCCTGAACATCGCGTTCTGAC
LOC_Os06g06660
Os.36001.1.S1_at--129--10291Chr06:3129843..3129867 (25 bp)
TTTGCTGTACTTTCCATTGTCATCT
LOC_Os06g06660
Target Sequence 
TGGGCTTGTTTCGAGTTCACCGGGAGGTCATTGTTCAATCTGAGGACGGAGCTGGCGCNTNNNTNGAACTTTGCAGTGGT
CTCCGATGTCATTATGTGTGTTCGAGCGGGCTTGTTTGGACGGCTGACTCCTCTGATCACCGATCTGCCTCCCAACAATG
TGACCATGGAGATCATCGTTGTCACGGCTGGGACGATTGATGCCAATGAGTTGAGATTCCCCAATGTTGGTGCAGTCTAG
AGGAAGACAGAAGTGCAGGAGCAGAACATCTGACAGTCACTCCCCCATTCATCGTTTCAGAATTTTTTTGCTGGCTCAGA
CCGAATGACAGGAGAAATCAATGGAATAGGCTTCAGAAAGGAAACCACCATCTGTTCTGTTTCCCGGTTGTTAGCTATGG
GATGCTCTGATGTCTTGAATGCCTGAACATCGCGTTCTGACATTTGCTGTACTTTCCATTGTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis