Browse Element(s) Details


Os.4365.1.S1_at

Description gb:AK100178.1
DB_XREF= gi:32985387
TID=Os.4365.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to leucoanthocyanidin dioxygenase.(AI440611) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029O18, full insert sequence.
FL= gb:AK100178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0672011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein
LOC_Os06g06680OsAffx.15289.1.S1_at11/116+3134632..3135975expressed protein
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06710OsAffx.27478.1.S1_at11/116+3141027..3142989hypothetical protein
LOC_Os06g06710OsAffx.15289.1.S1_at1/116+3141027..3142989hypothetical protein
LOC_Os06g06720Os.4365.1.S1_at11/116+3144478..3146612oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730Os.47447.1.S1_at11/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730OsAffx.10342.1.S1_x_at2/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740OsAffx.27479.1.S1_at11/116+3159101..3161401Myb-like DNA-binding domain containing protein
LOC_Os06g06750Os.4367.1.S1_at11/116+3161815..3168414Agamous-like MADS box protein AGL9 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009813biological_processflavonoid biosynthesis
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045432molecular_functionleucoanthocyanidin dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4365.1.S1_at--103--4371Chr06:3145656..3145680 (25 bp)
CCACAACCTGATCTTGCTCTTGGAT
LOC_Os06g06720
Os.4365.1.S1_at--915--5751Chr06:3145755..3145779 (25 bp)
GACGGGCTGTGGATACCTGTTCCTT
LOC_Os06g06720
Os.4365.1.S1_at--557--5251Chr06:3145792..3145816 (25 bp)
GAATCCTTGTAATTTTGGCTGACCA
LOC_Os06g06720
Os.4365.1.S1_at--541--7311Chr06:3146231..3146255 (25 bp)
GTGCTGTGCATCGAGCTATTGTCAA
LOC_Os06g06720
Os.4365.1.S1_at--602--10231Chr06:3146247..3146271 (25 bp)
TATTGTCAATGCTGATCGTGCCCGC
LOC_Os06g06720
Os.4365.1.S1_at--936--7271Chr06:3146264..3146288 (25 bp)
GTGCCCGCTTGTCAGTAGCAACATT
LOC_Os06g06720
Os.4365.1.S1_at--170--10031Chr06:3146279..3146303 (25 bp)
TAGCAACATTCTACGATCCATCCAA
LOC_Os06g06720
Os.4365.1.S1_at--625--2451Chr06:3146311..3146335 (25 bp)
AAAATTTGTACTGCTCCACAGCTCG
LOC_Os06g06720
Os.4365.1.S1_at--176--7771Chr06:3146377..3146401 (25 bp)
GGTGACTATGTCTCATCTTGGTATA
LOC_Os06g06720
Os.4365.1.S1_at--604--6351Chr06:3146431..3146455 (25 bp)
GATGCCCTCCTGATCGAGCAATAGA
LOC_Os06g06720
Os.4365.1.S1_at--1142--9611Chr06:3146492..3146516 (25 bp)
TCATGCGTGTTGTGATGCTGTCCAA
LOC_Os06g06720
Target Sequence 
CCACAACCTGATCTTGCTCTTGGATTGCAATCTCATTCTGATATGGGTGCAATAACACTTCTAATACAAGATGATGTGGG
TGGGCTTGAAGTACTGAAGGACGGGCTGTGGATACCTGTTCCTTCTTTGCCTGATGGAATCCTTGTAATTTTGGCTGACC
AGACAGAGATCATAACCAATGGAAGATACAAGAGTGCTGTGCATCGAGCTATTGTCAATGCTGATCGTGCCCGCTTGTCA
GTAGCAACATTCTACGATCCATCCAAATCTCGAAAAATTTGTACTGCTCCACAGCTCGTTTGCAAGGAGCATCCACAGAA
GTACCGGGATGTGATATATGGTGACTATGTCTCATCTTGGTATAGCAAAGGCCCAGAGGGCAAGCGCAACATTGATGCCC
TCCTGATCGAGCAATAGAACCAGAGGCAGCATTATATAGACAGAATAGAGACATTCATGCGTGTTGTGATGCTGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis