Browse Element(s) Details


Os.4367.1.S1_at

Description gb:U78890.1
DB_XREF= gi:1914837
GEN=OsMADS5
TID=Os.4367.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4367 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS box protein (OsMADS5) mRNA, complete cds.
PROD=MADS box protein
FL= gb:AK064184.1 gb:U78890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0675011/11Agamous-like MADS box protein AGL9 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06710OsAffx.27478.1.S1_at11/116+3141027..3142989hypothetical protein
LOC_Os06g06710OsAffx.15289.1.S1_at1/116+3141027..3142989hypothetical protein
LOC_Os06g06720Os.4365.1.S1_at11/116+3144478..3146612oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730Os.47447.1.S1_at11/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730OsAffx.10342.1.S1_x_at2/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740OsAffx.27479.1.S1_at11/116+3159101..3161401Myb-like DNA-binding domain containing protein
LOC_Os06g06750Os.4367.1.S1_at11/116+3161815..3168414Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760Os.15454.1.S2_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.2.S1_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.1.S1_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.44751.1.S1_at10/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06770Os.7823.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_x_at10/116+3185351..3190478expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0010093biological_processspecification of floral organ identity
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4367.1.S1_at--522--3071Chr06:3164043..3164067 (25 bp)
AATCTTCTTGGCGAGGACTTGGTTC
LOC_Os06g06750
Os.4367.1.S1_at--13--5691Chr06:3164028..3164052 (25 bp)
GACTTGGTTCCACTTAGCTTGAAGG
LOC_Os06g06750
Os.4367.1.S1_at--592--5951Chr06:3163998..3164022 (25 bp)
GAGCAACTTGAGAACCAGATCGAGA
LOC_Os06g06750
Os.4367.1.S1_at--816--10151Chr06:3162714..3162738 (25 bp)
TATCTTGCCAAGATGTAGGGCCCAG
LOC_Os06g06750
Os.4367.1.S1_at--695--6071Chr06:3162664..3162688 (25 bp)
GAGTTTCTCCATCATGCAATTTGTG
LOC_Os06g06750
Os.4367.1.S1_at--654--1551Chr06:3162071..3162095 (25 bp)
AGCTTACATGGATCACCTCAACCAA
LOC_Os06g06750
Os.4367.1.S1_at--735--10491Chr06:3162026..3162050 (25 bp)
TTAATGGACATCTCCTATGTTGGAT
LOC_Os06g06750
Os.4367.1.S1_at--393--8611Chr06:3162000..3162024 (25 bp)
TGGTGTTTGACGTAATGCTCTCTTT
LOC_Os06g06750
Os.4367.1.S1_at--47--3031Chr06:3161987..3162011 (25 bp)
AATGCTCTCTTTTACATGCGGGTTT
LOC_Os06g06750
Os.4367.1.S1_at--638--4671Chr06:3161970..3161994 (25 bp)
GCGGGTTTTACCTTAAGTGTGTGTG
LOC_Os06g06750
Os.4367.1.S1_at--1023--7291Chr06:3161936..3161960 (25 bp)
GTGCGTTTGTTTATGCTCTTTTGAA
LOC_Os06g06750
Target Sequence 
AATCTTCTTGGCGAGGACTTGGTTCCACTTAGCTTGAAGGAGCTCGAGCAACTTGAGAACCAGATCGAGATATCCCTCAT
GAATATCAGGTCATCAAAGAATCAACAGTTGCTTGATCAAGTATTTGAGCTCAAACGTAAGGAACAACAACTTCAAGATG
CTAATAAAGACTTAAAAAGGAAGATACAAGAAACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTAGGGCCC
AGTGGCCATGCTAGTGAAGCTAACCAAGAGTTTCTCCATCATGCAATTTGTGACCCTTCCCTGCATATAGGGTATCAAGC
TTACATGGATCACCTCAACCAATGAATGAATTGCTTATCACATTAATGGACATCTCCTATGTTGGATGTGGTGTTTGACG
TAATGCTCTCTTTTACATGCGGGTTTTACCTTAAGTGTGTGTGCTAAATTTAGTGCGTTTGTTTATGCTCTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis