Browse Element(s) Details

Os.44751.1.S1_at

Description

gb:CB661779
DB_XREF= gi:29665504
DB_XREF=OSJNEd05B16.f
CLONE=OSJNEd05B16
TID=Os.44751.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Glycine max gmsti mRNA.(X79770) (Gene), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06760	10/11	U-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06730	Os.47447.1.S1_at	11/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730	OsAffx.10342.1.S1_x_at	2/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740	OsAffx.27479.1.S1_at	11/11	6	+	3159101..3161401	Myb-like DNA-binding domain containing protein
LOC_Os06g06750	Os.4367.1.S1_at	11/11	6	+	3161815..3168414	Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760	Os.15454.1.S2_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.2.S1_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.1.S1_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.44751.1.S1_at	10/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06770	Os.7823.1.S1_at	11/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06770	Os.44749.1.S1_at	11/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06770	Os.44749.1.S1_x_at	10/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06780	Os.4370.1.S1_at	11/11	6	+	3194613..3198003	Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780	Os.4370.2.S1_x_at	10/11	6	+	3194613..3198003	Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790	Os.4371.1.S1_a_at	10/11	6	+	3198377..3202919	protein disulfide isomerase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44751.1.S1_at--463--655	1	Chr06:3175843..3175867 (25 bp)	GATTATGTTCATACCAGCTTGCCAG	LOC_Os06g06760
Os.44751.1.S1_at--182--31	1	Chr06:3175833..3175857 (25 bp)	ATACCAGCTTGCCAGTGCCATGAGT	LOC_Os06g06760
Os.44751.1.S1_at--93--493	1	Chr06:3175827..3175851 (25 bp)	GCTTGCCAGTGCCATGAGTTTGATT	LOC_Os06g06760
Os.44751.1.S1_at--744--607	1	Chr06:3175812..3175836 (25 bp)	GAGTTTGATTGTGTGTATCGGCCAG	LOC_Os06g06760
Os.44751.1.S1_at--36--747	1	Chr06:3175802..3175826 (25 bp)	GTGTGTATCGGCCAGTTTATCTAAA	LOC_Os06g06760
Os.44751.1.S1_at--549--937	1	Chr06:3175795..3175819 (25 bp)	TCGGCCAGTTTATCTAAAATGTCAA	LOC_Os06g06760
Os.44751.1.S1_at--448--265	1	Chr06:3175745..3175769 (25 bp)	AAGCCTGAAACTATTTCTGTTCTCA	LOC_Os06g06760
Os.44751.1.S1_at--839--947	1	Chr06:3175730..3175754 (25 bp)	TCTGTTCTCAAATGGATGATGTCCT	LOC_Os06g06760
Os.44751.1.S1_at--621--629	1	NONE	GATGATGTCCTACAATGCATGTCGT	NONE
Os.44751.1.S1_at--119--301	1	Chr06:3175703..3175727 (25 bp)	AATGCATGTCGTGAAACCTTTGAAA	LOC_Os06g06760
Os.44751.1.S1_at--529--719	1	Chr06:3175696..3175720 (25 bp)	GTCGTGAAACCTTTGAAATCTTATA	LOC_Os06g06760

Target Sequence

GATTATGTTCATACCAGCTTGCCAGTGCCATGAGTTTGATTGTGTGTATCGGCCAGTTTATCTAAAATGTCAAAGAGTTA
ATGAGGAAACATAGCTGAAAGCCTGAAACTATTTCTGTTCTCAAATGGATGATGTCCTACAATGCATGTCGTGAAACCTT
TGAAATCTTATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis