Browse Element(s) Details


Os.44749.1.S1_at

Description gb:NM_185641.1
DB_XREF= gi:34898367
TID=Os.44749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C19441(E10423),C99201(E10423) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) ESTs C19441(E10423),C99201(E10423) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0677011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06740OsAffx.27479.1.S1_at11/116+3159101..3161401Myb-like DNA-binding domain containing protein
LOC_Os06g06750Os.4367.1.S1_at11/116+3161815..3168414Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760Os.15454.1.S2_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.2.S1_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.1.S1_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.44751.1.S1_at10/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06770Os.7823.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_x_at10/116+3185351..3190478expressed protein
LOC_Os06g06780Os.4370.1.S1_at11/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780Os.4370.2.S1_x_at10/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790Os.4371.1.S1_a_at10/116+3198377..3202919protein disulfide isomerase, putative, expressed
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44749.1.S1_at--260--6331Chr06:3186998..3187022 (25 bp)
GATGCAATGCCTTTCATTCTTGACA
LOC_Os06g06770
Os.44749.1.S1_at--145--9011Chr06:3187000..3187024 (25 bp)
TGCAATGCCTTTCATTCTTGACACG
LOC_Os06g06770
Os.44749.1.S1_at--944--3011Chr06:3187003..3187026 (24 bp)
AATGCCTTTCATTCTTGACACGGTG
LOC_Os06g06770
Os.44749.1.S1_at--586--9191Chr06:3187005..3187026 (22 bp)
TGCCTTTCATTCTTGACACGGTGTG
LOC_Os06g06770
Os.44749.1.S1_at--920--3671Chr06:3187008..3187448 (25 bp)
CTTTCATTCTTGACACGGTGTGGGA
LOC_Os06g06770
Os.44749.1.S1_at--268--10551Chr06:3187010..3187450 (25 bp)
TTCATTCTTGACACGGTGTGGGACT
LOC_Os06g06770
Os.44749.1.S1_at--299--111Chr06:3187013..3187453 (25 bp)
ATTCTTGACACGGTGTGGGACTTGA
LOC_Os06g06770
Os.44749.1.S1_at--1114--10731Chr06:3187017..3187457 (25 bp)
TTGACACGGTGTGGGACTTGATAAA
LOC_Os06g06770
Os.44749.1.S1_at--661--6351Chr06:3187797..3187821 (25 bp)
GATAATAACAAGTGGCAAGCTAGAG
LOC_Os06g06770
Os.44749.1.S1_at--465--6651Chr06:3187821..3187845 (25 bp)
GTTGATAGTATCAAACCTCTATTTG
LOC_Os06g06770
Os.44749.1.S1_at--115--2791Chr06:3187995..3188018 (24 bp)
AAGAGGCAAGAATTGATCTAGGGAA
LOC_Os06g06770
Target Sequence 
GATGCAATGCCTTTCATTCTTGACACGGTGTGGGACTTGATAAAGCTTGGAGATCATCTCAGTGAACGGGAGGATGTTGA
TCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATA
GTGTTGTTGTTCCTATAATTGGTGTTCAGGGATTTCGATGGGCCATAGATAATAACAAGTGGCAAGCTAGAGTTGATAGT
ATCAAACCTCTATTTGAAGAGGCAAGAATTGATCTAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis