Browse Element(s) Details


Os.4371.1.S1_a_at

Description gb:AK073970.1
DB_XREF= gi:32983993
TID=Os.4371.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs D22477(C11179),AU075323(C11179) corresponds to a region of the predicted gene.~Similar to Rabbit multifunctional thyroid hormone binding protein mRNA, complete cds.(J05602) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071P17, full insert sequence.
FL= gb:AK073970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0679010/11protein disulfide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06760Os.15454.1.S2_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.2.S1_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.1.S1_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.44751.1.S1_at10/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06770Os.7823.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_x_at10/116+3185351..3190478expressed protein
LOC_Os06g06780Os.4370.1.S1_at11/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780Os.4370.2.S1_x_at10/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790Os.4371.1.S1_a_at10/116+3198377..3202919protein disulfide isomerase, putative, expressed
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed
LOC_Os06g06820OsAffx.4744.1.S1_at11/116+3218344..3221314hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4371.1.S1_a_at--262--8051Chr06:3201596..3201620 (25 bp)
GGAGAAGTTGGCCAAACATTTCAAT
LOC_Os06g06790
Os.4371.1.S1_a_at--1099--2071Chr06:3201611..3201635 (25 bp)
ACATTTCAATGATTTGGGCCAGACT
LOC_Os06g06790
Os.4371.1.S1_a_at--1083--5691Chr06:3201632..3201656 (25 bp)
GACTAATCTTAAATTTGCACGCATA
LOC_Os06g06790
Os.4371.1.S1_a_at--413--3351Chr06:3201649..3201673 (25 bp)
CACGCATAGATGCTTCTGTGAATGA
LOC_Os06g06790
Os.4371.1.S1_a_at--191--9031NONE
TGCAGATAAACAACTACCCTACACT
NONE
Os.4371.1.S1_a_at--822--2531Chr06:3202348..3202372 (25 bp)
AACTACCCTACACTGTTGCTATATC
LOC_Os06g06790
Os.4371.1.S1_a_at--551--6671Chr06:3202362..3202386 (25 bp)
GTTGCTATATCCTGCCCAAGACAAA
LOC_Os06g06790
Os.4371.1.S1_a_at--183--4551Chr06:3202375..3202395 (21 bp)
GCCCAAGACAAAAGCAACCCGATAA
LOC_Os06g06790
Os.4371.1.S1_a_at--1044--5391Chr06:3202527..3202551 (25 bp)
GAAGCTGCAAATTGCGGATGTCGAA
LOC_Os06g06790
Os.4371.1.S1_a_at--352--7971Chr06:3202542..3202566 (25 bp)
GGATGTCGAAACAGTAGCCGCTGGT
LOC_Os06g06790
Os.4371.1.S1_a_at--134--1191Chr06:3202554..3202578 (25 bp)
AGTAGCCGCTGGTGACATTGTCAAG
LOC_Os06g06790
Target Sequence 
GGAGAAGTTGGCCAAACATTTCAATGATTTGGGCCAGACTAATCTTAAATTTGCACGCATAGATGCTTCTGTGAATGAAC
ATCCCAAATTGCAGATAAACAACTACCCTACACTGTTGCTATATCCTGCCCAAGACAAAAGCAACCCGATAAAACTTTCA
AAGAAANCAAATCTGAAGGACNTGGCAAAATTCGTCAAGGAGAAGCTGCAAATTGCGGATGTCGAAACAGTAGCCGCTGG
TGACATTGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4371.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis