Browse Element(s) Details


OsAffx.4744.1.S1_at

Description tigr:9634.m00613
TID=OsAffx.4744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY052701 AT3g61540F2A19_140
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0682011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06780Os.4370.1.S1_at11/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780Os.4370.2.S1_x_at10/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790Os.4371.1.S1_a_at10/116+3198377..3202919protein disulfide isomerase, putative, expressed
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed
LOC_Os06g06820OsAffx.4744.1.S1_at11/116+3218344..3221314hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified
LOC_Os06g06840Os.31312.2.S1_x_at3/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06840Os.31312.5.S1_x_at2/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4744.1.S1_at--1134--5571Chr06:3219523..3219832 (25 bp)
GAAAGGCTGCATTATCTGTTTGAGA
LOC_Os06g06820
OsAffx.4744.1.S1_at--72--1811Chr06:3219689..3219713 (25 bp)
ACCCTATATTAGTCCCTGGCGCAAA
LOC_Os06g06820
OsAffx.4744.1.S1_at--177--2451Chr06:3219480..3219504 (25 bp)
AAAATCCTCTTTATGCTCTCTTGCA
LOC_Os06g06820
OsAffx.4744.1.S1_at--841--7151Chr06:3219359..3219476 (25 bp)
GTCTATCTATTGTCAGGGTTCTCCA
LOC_Os06g06820
OsAffx.4744.1.S1_at--967--7671Chr06:3219344..3219368 (25 bp)
GGGTTCTCCATCAAAATGGTCGGCT
LOC_Os06g06820
OsAffx.4744.1.S1_at--845--2971Chr06:3219330..3219354 (25 bp)
AATGGTCGGCTCACAAGATTGGCAG
LOC_Os06g06820
OsAffx.4744.1.S1_at--307--10771Chr06:3218835..3218859 (25 bp)
TTGATGAGATTCACGCCTTACGACC
LOC_Os06g06820
OsAffx.4744.1.S1_at--411--5991Chr06:3218803..3218827 (25 bp)
GAGACTGCCCATATGTTAGCGCACA
LOC_Os06g06820
OsAffx.4744.1.S1_at--1006--10451Chr06:3218788..3218812 (25 bp)
TTAGCGCACAAAGAGGACTGGCCCC
LOC_Os06g06820
OsAffx.4744.1.S1_at--900--2191Chr06:3218525..3218763 (25 bp)
ACAACAATAAGGTCCCGGTGGCTGC
LOC_Os06g06820
OsAffx.4744.1.S1_at--326--4951Chr06:3218432..3218456 (25 bp)
GCATCCGGCTCTGGATTACCAACGA
LOC_Os06g06820
Target Sequence 
GAAAGGCTGCATTATCTGTTTGAGAGGGTGTGGGACCCTATATTAGTCCCTGGCGCAAAAAAGACTATAAGTTATTACTT
CCTGAAAGAGTTTGAGAGGTGGTTAGGTTTTGATCAAAATCCTCTTTATGCTCTCTTGCATGAGTCTATCTATTGTCAGG
GTTCTCCATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAA
GGCAGACCTGTTTATTTTACTGGAGAGATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGGA
GACTGCCCATATGTTAGCGCACAAAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGGTCCCGG
TGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACATCGCCAAGGAGACGGCCTCCCAGATCGCGGGCATC
CGGCTCTGGATTACCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis