Browse Element(s) Details


Os.54240.1.S1_at

Description gb:AK102733.1
DB_XREF= gi:32987942
TID=Os.54240.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106B03, full insert sequence.
FL= gb:AK102733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0686011/11NB-ARC domain containing protein, expressed
LOC_Os06g068502/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed
LOC_Os06g06820OsAffx.4744.1.S1_at11/116+3218344..3221314hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified
LOC_Os06g06840Os.31312.2.S1_x_at3/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06840Os.31312.5.S1_x_at2/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54240.1.S1_at--668--2912Chr06:3241500..3241524 (25 bp)
AAGGATCATGGCTCACCATCAGCAA
LOC_Os06g06860
Os.54240.1.S1_at--269--792Chr06:3241473..3241497 (25 bp)
ATGGTTTCCGATGTCTCAAGTTTGC
LOC_Os06g06860
Os.54240.1.S1_at--824--2811Chr06:3241456..3241480 (25 bp)
AAGTTTGCCTTTCTTTGCAACGTGT
LOC_Os06g06860
Os.54240.1.S1_at--918--5293Chr06:3241403..3241427 (25 bp)
GAAGGACCTCCACATTGGCATTAGA
LOC_Os06g06860
Os.54240.1.S1_at--126--7391Chr06:3241365..3241389 (25 bp)
GTGAGAATGATTCCTTCCAGCACCT
LOC_Os06g06860
Os.54240.1.S1_at--325--6111Chr06:3241323..3241347 (25 bp)
GAGTCCATGCCTGGATTTCTGGCAA
LOC_Os06g06860
Os.54240.1.S1_at--65--8311Chr06:3241016..3241040 (25 bp)
GGCTTTTGCATCAATGGCTACCTTG
LOC_Os06g06860
Os.54240.1.S1_at--857--10852Chr06:3240989..3241013 (25 bp)
TTGGTCCTGGAGTTGGCACAGCATT
LOC_Os06g06860
Os.54240.1.S1_at--803--6831Chr06:3240961..3240985 (25 bp)
GTTTCATCTCTACCATTTTTACTCA
LOC_Os06g06860
Os.54240.1.S1_at--1139--9771Chr06:3240879..3240903 (25 bp)
TAAGCACGCTACGTTTGGTTGCTCC
LOC_Os06g06860
Os.54240.1.S1_at--300--7871Chr06:3240836..3240860 (25 bp)
GGTTTGCTAGCTCTATCCATTAATT
LOC_Os06g06860
Target Sequence 
AAGGATCATGGCTCACCATCAGCAACCATGGTTTCCGATGTCTCAAGTTTGCCTTTCTTTGCAACGTGTTGTTTATGCAT
GATTCCATGCCTAATCTGAAGGACCTCCACATTGGCATTAGATTGAATGTGGTTGGTGAGAATGATTCCTTCCAGCACCT
CCCCAACACCCTCTGCAGAGTCCATGCCTGGATTTCTGGCAATCTAGATGCGGTCTCAAAACTGAAAGAAAAAATCTTGA
ACATTGCGAACACACATCCCAACCGTCCCTCACTCACGACTGCGACATACATTCAGTAGCACTAGAGGTGGAGCAGCGAA
AAACAGAAGCGTCAATGAGCCGCAGGACGATGGCTTTTGCATCAATGGCTACCTTGGCTTGGTCCTGGAGTTGGCACAGC
ATTTGTGTTTCATCTCTACCATTTTTACTCAGTTGCATAATTACCATTTTCAAACTTGTTCACTTGTTTCAATTTTCATG
TATTTGAATAAGCACGCTACGTTTGGTTGCTCCTCTAGCCCCATATGTTATGGTTTGCTAGCTCTATCCATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis