Browse Element(s) Details


OsAffx.26473.1.S1_at

Description tigr:9632.m04371
TID=OsAffx.26473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g454507/11hypothetical protein
LOC_Os06g068901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45430OsAffx.22848.4.S1_at2/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.3.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.4.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26473.1.S1_at--1154--1991Chr04:26678471..26678495 (25 bp)
ACTCACCGGCGATAGGAGTCGGCGT
NONE
OsAffx.26473.1.S1_at--840--1151Chr04:26678455..26678479 (25 bp)
AGTCGGCGTCAGATCGCAGGCGTCA
NONE
OsAffx.26473.1.S1_at--514--1291Chr04:26678445..26678469 (25 bp)
AGATCGCAGGCGTCAACAACTTTTG
NONE
OsAffx.26473.1.S1_at--1094--2451Chr04:26678431..26678455 (25 bp)
AACAACTTTTGTACGATGGGTGAGA
NONE
OsAffx.26473.1.S1_at--1144--9572Chr02:19694421..19694546 (24 bp)
TCTTGTTGATTCTTCTTTTGCAGTT
NONE
OsAffx.26473.1.S1_at--831--3652Chr06:3269115..3269134 (20 bp)
CTTCTTTTGCAGTTCACGCATGCAT
LOC_Os06g06890
OsAffx.26473.1.S1_at--857--5231Chr04:26678199..26678223 (25 bp)
GAATACGCTGCCTCAACATCGCGAA
LOC_Os04g45450
OsAffx.26473.1.S1_at--287--6691Chr04:26678079..26678103 (25 bp)
GTTGCGCCGCCGGAACACGGGATAT
LOC_Os04g45450
OsAffx.26473.1.S1_at--286--8171Chr04:26678068..26678092 (25 bp)
GGAACACGGGATATCCTCGTCTGGC
LOC_Os04g45450
OsAffx.26473.1.S1_at--587--6491Chr04:26678059..26678083 (25 bp)
GATATCCTCGTCTGGCCGGTGGCGA
LOC_Os04g45450
OsAffx.26473.1.S1_at--357--4711Chr04:26677982..26678006 (25 bp)
GCTGTCGTCGAGTCCGGACGTGCCA
LOC_Os04g45450
Target Sequence 
ACTCACCGGCGATAGGAGTCGGCGTCAGATCGCAGGCGTCAACAACTTTTGTACGATGGGTGAGAATTCTGTGATTTTCT
TGTTGATTCTTCTTTTGCAGTTCACGCATGCATGAGATGGCGACGAGACGAGAATGCCGGAGCACCGCTGCACGGCGCCC
GCACGCCGTCGTTGAGTCTGCCGAGTCATGCAAGAGCTGTTCGCCGGACCGGGGAGCAAGCCGCCGTCCGTTGTCTTGTC
CGGACGAAGGGCCTCGTCATGCTACCTCGCCGGAATACGCTGCCTCAACATCGCGAACGCCGCCCGCAGAACCATGACGC
CTCCCTCGCCGGAGTCGCCGTGCCAAACGTCTCGCCGACCGTCTTCGGCGGTGTTGTCATCTTCCTCACGCCGTTGCGCC
GCCGGAACACGGGATATCCTCGTCTGGCCGGTGGCGACCTCTACCTCACAGCGCCTTCATCGGTGCGCGCCGTCATCCTC
CTCACGCGCGCTGTCGTCGAGTCCGGACGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis