Browse Element(s) Details


Os.49436.1.S1_x_at

Description gb:AK103654.1
DB_XREF= gi:32988863
TID=Os.49436.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135E09, full insert sequence.
FL= gb:AK103654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4546010/11receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45430OsAffx.22848.4.S1_at2/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.3.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.4.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49436.1.S1_x_at--153--7331Chr04:26682682..26682706 (25 bp)
GTGCTACGTCAGGTACTGGGCCAAC
LOC_Os04g45460
Os.49436.1.S1_x_at--1008--4531NONE
GCCCGTCACAAGATTATTCGCAAGA
NONE
Os.49436.1.S1_x_at--969--9411Chr04:26684347..26684371 (25 bp)
TCGGGCGGACTGTGGCAATAATCGT
LOC_Os04g45460
Os.49436.1.S1_x_at--62--9771Chr04:26684365..26684389 (25 bp)
TAATCGTAGGCATCTTGGCAGGGCT
LOC_Os04g45460
Os.49436.1.S1_x_at--678--8611Chr04:26684401..26684425 (25 bp)
TGGTGTTCATCTCTTTCCTTAGAAA
LOC_Os04g45460
Os.49436.1.S1_x_at--115--9631Chr04:26684604..26684624 (21 bp)
TCATGCTAGCTTCGTTTGATGTCTG
LOC_Os04g45460
Os.49436.1.S1_x_at--1077--971Chr04:26684627..26684651 (25 bp)
AGGAGTTTCAGTTTCAGTCCTCGCA
LOC_Os04g45460
Os.49436.1.S1_x_at--960--3451Chr04:26684641..26684665 (25 bp)
CAGTCCTCGCATTCTGTGTGAGAAA
LOC_Os04g45460
Os.49436.1.S1_x_at--1071--1351Chr04:26684685..26684709 (25 bp)
AGAGCTTCGCTTGCATGACGTTGGC
LOC_Os04g45460
Os.49436.1.S1_x_at--1015--8051Chr04:26684782..26684806 (25 bp)
GGAGCAGCACTACCTTACTTTGGGT
LOC_Os04g45460
Os.49436.1.S1_x_at--551--7131Chr04:26684805..26684829 (25 bp)
GTCATCGTTTTTTCGTCCACTAATA
LOC_Os04g45460
Target Sequence 
GTGCTACGTCAGGTACTGGGCCAACGGCTTCTACTTCCGCCCGTCACAAGATTATTCGCAAGATGACGTCGGGCGGACTG
TGGCAATAATCGTAGGCATCTTGGCAGGGCTGGCGATCCTCGTGGTGTTCATCTCTTTCCTTAGAAAATCATGCTAGCTT
CGTTTGATGTCTGGAAGGAGTTTCAGTTTCAGTCCTCGCATTCTGTGTGAGAAACTGAGAATGACTTGTAAAGAGAGCTT
CGCTTGCATGACGTTGGCAAGAGCTTCATATCGCTTGTAATATCATTTTTCCAGCAATAGATATGTAAGCGAGATCTTGG
TAGGGCTATCGGAGCAGCACTACCTTACTTTGGGTCATCGTTTTTTCGTCCACTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49436.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis