Browse Element(s) Details


OsAffx.14276.1.S1_at

Description tigr:9632.m04372
TID=OsAffx.14276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=secretory protein-like - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4546011/11receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45430OsAffx.22848.4.S1_at2/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.3.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.4.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14276.1.S1_at--851--8431Chr04:26685003..26685027 (25 bp)
GGCCATATTGTTGGGTCGCTAGCTA
LOC_Os04g45460
OsAffx.14276.1.S1_at--685--7231Chr04:26685017..26685041 (25 bp)
GTCGCTAGCTATATTGTTGTCTCCA
LOC_Os04g45460
OsAffx.14276.1.S1_at--367--8671Chr04:26685134..26685158 (25 bp)
TGTGTCCTCCTTCAGTCATTGGGCT
LOC_Os04g45460
OsAffx.14276.1.S1_at--953--7031Chr04:26685174..26685198 (25 bp)
GTAACGGCCGCAAGCGTTGATACTT
LOC_Os04g45460
OsAffx.14276.1.S1_at--294--10731Chr04:26685197..26685221 (25 bp)
TTGCTTCCATCATTTTGGCCTCAGA
LOC_Os04g45460
OsAffx.14276.1.S1_at--179--3431Chr04:26685218..26685242 (25 bp)
CAGAGACACCGTTGTTGCATATGTT
LOC_Os04g45460
OsAffx.14276.1.S1_at--685--3151Chr04:26685303..26685327 (25 bp)
AATTCGCACCTGACAATTGGCAAGG
LOC_Os04g45460
OsAffx.14276.1.S1_at--907--2431Chr04:26685421..26685445 (25 bp)
AAAAGAGCCTTGTACTCACCATCTT
LOC_Os04g45460
OsAffx.14276.1.S1_at--898--2451Chr04:26685451..26685475 (25 bp)
AACAATCCCAGTTGTCGACTAATGG
LOC_Os04g45460
OsAffx.14276.1.S1_at--340--831Chr04:26685472..26685496 (25 bp)
ATGGTTGACCAGAGCTTCTTGCAGC
LOC_Os04g45460
OsAffx.14276.1.S1_at--1132--2411Chr04:26685521..26685545 (25 bp)
AAAACCAAACACAAGCTTCCCGATG
LOC_Os04g45460
Target Sequence 
GGCCATATTGTTGGGTCGCTAGCTATATTGTTGTCTCCATGGTATATACAGAAGTTCACACAAATGAGGTCTGCAAACCT
CCGGGGCCTTTGGTATTCAATTTTACCTGTATATAGCCGGGGATCAAGCACTGTGTCCTCCTTCAGTCATTGGGCTCCAT
CTCGCCGAGTTGTAACGGCCGCAAGCGTTGATACTTGCTTCCATCATTTTGGCCTCAGAGACACCGTTGTTGCATATGTT
TGCAAATGCTCTCATGTATTTCATGCCATACTGAGTGAGTGATCCACATTGAGATTCAAAAATTCGCACCTGACAATTGG
CAAGGAACCAAGGATAGCATTGTGCAATTAAGGCCAACAGGCAACAAGAAGACAATAACTCAAGAAATATTTATAGATGG
CTTATATCAGAGTTAAAAAAAAGAGCCTTGTACTCACCATCTTCTTCAAACAATCCCAGTTGTCGACTAATGGTTGACCA
GAGCTTCTTGCAGCCTCAAGGGCTAAAGGCCCATTTTCAAAACCAAACACAAGCTTCCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis