Browse Element(s) Details


Os.16317.1.S1_at

Description gb:AK108550.1
DB_XREF= gi:32993759
TID=Os.16317.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full insert sequence.
FL= gb:AK108550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g454809/11stress-induced protein sti1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16317.1.S1_at--1123--10111Chr04:26696540..26696564 (25 bp)
TATGACAAAGCACTGGAAACCTATC
LOC_Os04g45480
Os.16317.1.S1_at--859--2331Chr04:26696575..26696599 (25 bp)
AAAGCATGACCCGAACAACCAGGAG
LOC_Os04g45480
Os.16317.1.S1_at--744--8051Chr04:26696704..26696726 (23 bp)
GGAGATGTGTCCAGCGGATCAACAA
LOC_Os04g45480
Os.16317.1.S1_at--1030--4991Chr04:26697241..26697265 (25 bp)
GCAGGACCCAGAAATCCAGAACATT
LOC_Os04g45480
Os.16317.1.S1_at--801--2911Chr04:26697269..26697291 (23 bp)
AAGGATCCTATCATGCAGCAGGTGT
LOC_Os04g45480
Os.16317.1.S1_at--32--1351Chr04:26697518..26697542 (25 bp)
AGAGTAATCTGATCGGTGTGCCTGG
LOC_Os04g45480
Os.16317.1.S1_at--1086--7031Chr04:26697583..26697607 (25 bp)
GTACAATCGTGTTTATGCAAATTCC
LOC_Os04g45480
Os.16317.1.S1_at--812--91Chr04:26697603..26697627 (25 bp)
ATTCCGATTGGTCATGGCTGAGCCG
LOC_Os04g45480
Os.16317.1.S1_at--339--4491Chr04:26697624..26697648 (25 bp)
GCCGAATTTCCATACTGCTGATCTT
LOC_Os04g45480
Os.16317.1.S1_at--305--4751NONE
GCTGATCTTTTACTTTGGACACGAC
NONE
Os.16317.1.S1_at--1006--8511NONE
TGGACACGACCCTATAACCGATTTT
NONE
Target Sequence 
TATGACAAAGCACTGGAAACCTATCAGGCCGGCNTAAAGCATGACCCGAACAACCAGGAGTTGCTTGATGGTGTTAGGAG
ATGTGTCCAGCGGATCAACAAGGCTAGCAGAGGGGAACTGAGCCAGGAGGAATTGCAAGAAAGACAGAACAAGGCTATGC
AGGACCCAGAAATCCAGAACATTCTGAAGGATCCTATCATGCAGCAGGTGTTGACCGACTTCCAGGAGAATCCGAAGGCT
GCTCAGGCGCATCTCAAGAACCCCGGAGTGATGCAGAAGATCCAGAAGCTAGTAAGTGCAGGGATAGTCCAAATGAAGTA
GACATGCTGAAAGGGCCAGGGATAGAGTAATCTGATCGGTGTGCCTGGAAACTTCTGAATGCAAAATTCGTCGTCGAATT
TTTGTACAGTACAATCGTGTTTATGCAAATTCCGATTGGTCATGGCTGAGCCGAATTTCCATACTGCTGATCTTTTACTT
TGGACACGACCCTATAACCGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis