Browse Element(s) Details


OsAffx.30150.1.S1_at

Description gb:AK108065.1
DB_XREF= gi:32993274
TID=OsAffx.30150.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B08, full insert sequence.
FL= gb:AK108065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g455103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30150.1.S1_at--211--3471NONE
CAGGGTTTATCAGTTTGCGGCGTAA
NONE
OsAffx.30150.1.S1_at--575--1951Chr04:26707292..26707316 (25 bp)
ACTGAAACTCAAATCGTCGACCGCT
NONE
OsAffx.30150.1.S1_at--837--2571Chr04:26707281..26707305 (25 bp)
AATCGTCGACCGCTAATTAACTGAG
NONE
OsAffx.30150.1.S1_at--850--911Chr04:26707236..26707260 (25 bp)
AGGCATCATGCAACGGTGGACGCGC
NONE
OsAffx.30150.1.S1_at--358--5151Chr04:26707213..26707237 (25 bp)
GCAACGGGATGCTGAACTTCTCGCA
LOC_Os04g45510
OsAffx.30150.1.S1_at--969--1631Chr04:26707004..26707028 (25 bp)
AGCGAGCACCTCAGCGAGACGGTGA
LOC_Os04g45510
OsAffx.30150.1.S1_at--35--7951Chr04:26706915..26706939 (25 bp)
GGATATACTGTCGTCCCAGCAGAAA
LOC_Os04g45510
OsAffx.30150.1.S1_at--544--2251Chr04:26706893..26706917 (25 bp)
AAATAGTAGTGACCCATGACATCAG
NONE
OsAffx.30150.1.S1_at--728--3691Chr04:26706840..26706864 (25 bp)
CTATGTATTTACCTAGCAGCTAGCT
NONE
OsAffx.30150.1.S1_at--163--10051Chr04:26706816..26706840 (25 bp)
TAGATCGTCAGCTTCTTTTCTGGGC
NONE
OsAffx.30150.1.S1_at--100--4451Chr04:26706785..26706809 (25 bp)
GCCATTGTGGTATTCGGTTTTTTAG
NONE
Target Sequence 
CAGGGTTTATCAGTTTGCGGCGTAAAAGGAGCAGTGTGTAGCAATTAACTGAAACTCAAATCGTCGACCGCTAATTAACT
GAGGTATTCAGACAAAGAATAACAGGCATCATGCAACGGTGGACGCGCAACGGGATGCTGAACTTCTCGCAGCCGGCGTC
GTCGTCGCCGTTCGGATTCTACGACGCCGGCCACGGGGCGTCGAGCAGCGGCGGCAGCCGGTCGCACGGCTGCAGGAGCC
AGAACAAGGACCAGCGCAACCTGGAGAAGAACCTGACCAAGGTGAGGAAGGAGTGGATGAAGGTGAAGGAGGAGATGGGC
TACGCGAGGCTCCTCAGCGAGCACCTCAGCGAGACGGTGACGGAGACCGACCGGAAGGTGGCTGCCATGCTCGAGGAGCT
CGACCGGACGGACAAGTACATGCAGGATATACTGTCGTCCCAGCAGAAATAGTAGTGACCCATGACATCAGATATTCAGA
TGCGTATTTTGATGGATTTCTATGTATTTACCTAGCAGCTAGCTAGATCGTCAGCTTCTTTTCTGGGCATTTTTGCCATT
GTGGTATTCGGTTTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis