Browse Element(s) Details


Os.47710.2.A1_s_at

Description gb:CB667594
DB_XREF= gi:29671319
DB_XREF=OSJNEd14P23.r
CLONE=OSJNEd14P23
TID=Os.47710.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47710 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:S60050 (A.thaliana) S60050 vacuolar processing enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4547011/11Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45430OsAffx.22848.4.S1_at2/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.3.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45430OsAffx.22848.4.S1_x_at1/114+26655845..26661958retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47710.2.A1_s_at--1126--3391Chr04:26685536..26685560 (25 bp)
CAGCAGTATCGATTTCATCGGGAAG
LOC_Os04g45470
Os.47710.2.A1_s_at--100--3511Chr04:26685521..26685545 (25 bp)
CATCGGGAAGCTTGTGTTTGGTTTT
LOC_Os04g45470
Os.47710.2.A1_s_at--1018--4311Chr04:26685451..26685475 (25 bp)
CCATTAGTCGACAACTGGGATTGTT
LOC_Os04g45470
Os.47710.2.A1_s_at--505--5251Chr04:26685275..26685299 (25 bp)
GAATCTCAATGTGGATCACTCACTC
LOC_Os04g45470
Os.47710.2.A1_s_at--730--7951Chr04:26685263..26685287 (25 bp)
GGATCACTCACTCAGTATGGCATGA
LOC_Os04g45470
Os.47710.2.A1_s_at--359--2831Chr04:26685174..26685198 (25 bp)
AAGTATCAACGCTTGCGGCCGTTAC
LOC_Os04g45470
Os.47710.2.A1_s_at--4--8551Chr04:26685137..26685161 (25 bp)
TGGAGCCCAATGACTGAAGGAGGAC
LOC_Os04g45470
Os.47710.2.A1_s_at--1043--3611Chr04:26685106..26685130 (25 bp)
CTTGATCCCCGGCTATATACAGGTA
LOC_Os04g45470
Os.47710.2.A1_s_at--818--1191Chr04:26684959..26684983 (25 bp)
AGTAGGTGTCATATGCTTGTTGTAC
LOC_Os04g45470
Os.47710.2.A1_s_at--353--10111Chr04:26684927..26684951 (25 bp)
TATGGCTTGTGTGTGATGTGGCCCT
LOC_Os04g45470
Os.47710.2.A1_s_at--51--6251Chr04:26684913..26684937 (25 bp)
GATGTGGCCCTCTGTAAATTACTCG
LOC_Os04g45470
Target Sequence 
CAGCAGTATCGATTTCATCGGGAAGCTTGTGTTTGGTTTTGAAAATGGCCCTTTAGCCCTTGAGGCTGCAAGAAGTTTTG
GTCACCCATTAGTCGACAACTGGGATTGTTTGAAGAAGATGGTGCGAATTTTTGAATCTCAATGTGGATCACTCACTCAG
TATGGCATGAAATACATGAGAGCATTTGCAAACATATGCAACAACGGTGTTTTTGAGGCCAAAATGATGGAAGCAAGTAT
CAACGCTTGCGGCCGTTACAACTGGGCGAGATGGAGCCCAATGACTGAAGGAGGACCCAGTGCTTGATCCCCGGCTATAT
ACAGGTAAAATTGAATACCAAAGGCCCCGGAGGTTTGCAGCCCTCATTTGTGTGAACTTTTGTATATCCCATGGAGACAA
CAATATAGTTAGGGACCCAACAATATGGCCCCTTGTGTGATGGTTAATCAGTAGGTGTCATATGCTTGTTGTACCCAACA
ATATGGCTTGTGTGTGATGTGGCCCTCTGTAAATTACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47710.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis