Browse Element(s) Details


Os.7994.1.S1_at

Description gb:AK058778.1
DB_XREF= gi:32968796
TID=Os.7994.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B12, full insert sequence.
FL= gb:AK058778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4549011/11Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os01g518401/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7994.1.S1_at--48--5091Chr04:26699449..26699473 (25 bp)
GCAGCCAGAGGTGCATTCCGTGAAG
LOC_Os04g45490
Os.7994.1.S1_at--853--5291Chr04:26699417..26699441 (25 bp)
GAAGGCTGGTCCAAGACTCCTGGAA
LOC_Os04g45490
Os.7994.1.S1_at--267--1051Chr04:26699376..26699400 (25 bp)
AGGTGATAACCCCTGAGGAGCATTT
LOC_Os04g45490
Os.7994.1.S1_at--428--2911Chr04:26699190..26699213 (24 bp)
AAGGTTGTCGATGCTTTCGTGCCAC
LOC_Os04g45490
Os.7994.1.S1_at--1108--7271Chr04:26699172..26699196 (25 bp)
GTGCCACTTGCGGAGATGTTCCAGT
LOC_Os04g45490
Os.7994.1.S1_at--584--6031Chr04:26699160..26699184 (25 bp)
GAGATGTTCCAGTACGTCAGCACGC
LOC_Os04g45490
Os.7994.1.S1_at--475--2171Chr04:26699105..26699129 (25 bp)
ACACGATGCAGCTCGCCAAGTTCGA
LOC_Os04g45490
Os.7994.1.S1_at--463--5451Chr04:26699059..26699083 (25 bp)
GAACGAGCTCTCTGCGGCGAAACAG
LOC_Os04g45490
Os.7994.1.S1_at--568--7511Chr04:26698939..26698963 (25 bp)
TGTAGCTTTGTAGCGTCAAGCCCCT
LOC_Os04g45490
Os.7994.1.S1_at--544--6852Chr04:26698902..26698926 (25 bp)
GTTTGCCATTGTTTTGGACCTGATA
LOC_Os04g45490
Os.7994.1.S1_at--105--8091Chr04:26698887..26698911 (25 bp)
GGACCTGATAATGGCCTTGTCAAGT
LOC_Os04g45490
Target Sequence 
GCAGCCAGAGGTGCATTCCGTGAAGGATTGAGGAAGGCTGGTCCAAGACTCCTGGAACCTATAATGAAAGTTGAGGTGAT
AACCCCTGAGGAGCATTTGGGTGATGTTATTGGTGATTTGAACTCCAGAAGAGGACAGGTCAATAGCTTCGGGGATAAAC
CTGGTGGCCTGAAGGTTGTCGATGCTTTCGTGCCACTTGCGGAGATGTTCCAGTACGTCAGCACGCTGAGAGGAATGACC
AAGGGGCGCGCGTCTTACACGATGCAGCTCGCCAAGTTCGACGTCGTCCCACAGCACATCCAGAACGAGCTCTCTGCGGC
GAAACAGGAGGAAGCTAGTACTGCTTAATTTTTTTTCCAGATTTTGGTAGATATACTAAACGGCGACACCGGAGCAGGTG
GATAATAGGACATCCAAGTGTATGTAGCTTTGTAGCGTCAAGCCCCTCGGGGAGATATTGTTTGCCATTGTTTTGGACCT
GATAATGGCCTTGTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis