Browse Element(s) Details


Os.19098.1.S1_at

Description gb:AK071415.1
DB_XREF= gi:32981438
TID=Os.19098.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090G07, full insert sequence.
FL= gb:AK071415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0681011/11ZW18 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06770Os.7823.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_x_at10/116+3185351..3190478expressed protein
LOC_Os06g06780Os.4370.1.S1_at11/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780Os.4370.2.S1_x_at10/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790Os.4371.1.S1_a_at10/116+3198377..3202919protein disulfide isomerase, putative, expressed
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed
LOC_Os06g06820OsAffx.4744.1.S1_at11/116+3218344..3221314hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified
LOC_Os06g06840Os.31312.2.S1_x_at3/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06840Os.31312.5.S1_x_at2/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19098.1.S1_at--842--651Chr06:3217237..3217261 (25 bp)
ATGAATTTCGGCACTCGCATTGCAA
LOC_Os06g06810
Os.19098.1.S1_at--34--9251Chr06:3217251..3217275 (25 bp)
TCGCATTGCAAACCTTCATGGGAAT
LOC_Os06g06810
Os.19098.1.S1_at--624--7611Chr06:3217270..3217294 (25 bp)
GGGAATATACAGTTCGCTCCATATA
LOC_Os06g06810
Os.19098.1.S1_at--533--5891Chr06:3217318..3217342 (25 bp)
GAGCTTGAGTTATACCGGAATTTCC
LOC_Os06g06810
Os.19098.1.S1_at--222--3131Chr06:3217336..3217360 (25 bp)
AATTTCCAGATCCTGTTTTCAGCTC
LOC_Os06g06810
Os.19098.1.S1_at--998--6791Chr06:3217350..3217374 (25 bp)
GTTTTCAGCTCGCAACGGGAGGCCT
LOC_Os06g06810
Os.19098.1.S1_at--670--171Chr06:3217391..3217415 (25 bp)
ATTTTTGCACCGTGACTGGAGGCAC
LOC_Os06g06810
Os.19098.1.S1_at--996--5791Chr06:3217569..3217593 (25 bp)
GACGCACGATCACTGAGCTAATTCC
LOC_Os06g06810
Os.19098.1.S1_at--537--2891Chr06:3217661..3217685 (25 bp)
AAGGGTTTCGATCGTCTCTGTAGAT
LOC_Os06g06810
Os.19098.1.S1_at--110--3871Chr06:3217678..3217702 (25 bp)
CTGTAGATCGGTTAGCTTGAGCTGC
LOC_Os06g06810
Os.19098.1.S1_at--276--10351Chr06:3217743..3217767 (25 bp)
TTTTTACTCCGGATGCCAGCAAGTC
LOC_Os06g06810
Target Sequence 
ATGAATTTCGGCACTCGCATTGCAAACCTTCATGGGAATATACAGTTCGCTCCATATACAACAGAGTGGACAGGACGTGG
TGAGCTTGAGTTATACCGGAATTTCCAGATCCTGTTTTCAGCTCGCAACGGGAGGCCTCTTNTCTTGAGGCACAATTTTT
GCACCGTGACTGGAGGCACNTGGCTCATNTTTTTTNNTCNTGAGCAAGGAGNCTGATTCAGCTNGTTCNGGCAGCAGCAT
GGAGAGGTATTTCCACNTTCAATTTCAGATNGGTGCGTATTGACATGATGTTGTTNTGTAGTTCNGTCNNAATNTTTGCC
AATGTAATAATACGTTAATNTNTTGACGCACGATCACTGAGCTAATTCCNTTTAGGAAGGGANCTAGAGCTAACTATTTC
ATTCTTTGTTACCTTTTTACTCCGGATGTCTGAAAGTGAAGGGTTTCGATCGTCTCTGTAGATCGGTTAGCTTGAGCTGC
TTGTAAGNTATAGAAGAGGAAAAGGCTGTTTCTTTGTTACCTTTTTACTCCGGATGCCAGCAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis