Browse Element(s) Details


Os.4370.1.S1_at

Description gb:AK058295.1
DB_XREF= gi:32968313
TID=Os.4370.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTD24835(R2634) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC T06D20 genomic sequence, complete sequence.(U90439) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F03, full insert sequence.
FL= gb:AK058295.1 gb:AK106071.1 gb:AK073824.1 gb:AK060328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0678011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06760Os.15454.1.S2_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.2.S1_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.1.S1_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.44751.1.S1_at10/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06770Os.7823.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_at11/116+3185351..3190478expressed protein
LOC_Os06g06770Os.44749.1.S1_x_at10/116+3185351..3190478expressed protein
LOC_Os06g06780Os.4370.1.S1_at11/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780Os.4370.2.S1_x_at10/116+3194613..3198003Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790Os.4371.1.S1_a_at10/116+3198377..3202919protein disulfide isomerase, putative, expressed
LOC_Os06g06810Os.19098.1.S1_at11/116+3213229..3217788ZW18 protein, putative, expressed
LOC_Os06g06820OsAffx.4744.1.S1_at11/116+3218344..3221314hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4370.1.S1_at--1135--2211Chr06:3197555..3197579 (25 bp)
ACAAGATCTGAGAGGCCATCGTCGC
LOC_Os06g06780
Os.4370.1.S1_at--135--3991Chr06:3197617..3197641 (25 bp)
CGGGCGTCGCCTGCAGTGATCGATC
LOC_Os06g06780
Os.4370.1.S1_at--538--5871Chr06:3197649..3197673 (25 bp)
GAGCCGTTCTTCTGTTCTTGCAGTT
LOC_Os06g06780
Os.4370.1.S1_at--996--2671Chr06:3197704..3197728 (25 bp)
AAGCGTTTATATGGTCACTTGTTAA
LOC_Os06g06780
Os.4370.1.S1_at--443--9891Chr06:3197732..3197756 (25 bp)
TACTTGAGCTTCGATTTTGTTGATA
LOC_Os06g06780
Os.4370.1.S1_at--79--10291Chr06:3197811..3197835 (25 bp)
TTTCCTGAGGAAACTATGTACCGAA
LOC_Os06g06780
Os.4370.1.S1_at--392--4111Chr06:3197832..3197856 (25 bp)
CGAAGTGTGGTACTAGAGTCAGTCT
LOC_Os06g06780
Os.4370.1.S1_at--914--6091Chr06:3197847..3197871 (25 bp)
GAGTCAGTCTAGATGGTTTTACGTT
LOC_Os06g06780
Os.4370.1.S1_at--54--10351Chr06:3197885..3197909 (25 bp)
TTTACAGTTTCGCATGGACAATCAC
LOC_Os06g06780
Os.4370.1.S1_at--521--8151Chr06:3197900..3197924 (25 bp)
GGACAATCACTGCATTTTGTTTTGA
LOC_Os06g06780
Os.4370.1.S1_at--881--7811Chr06:3197979..3198003 (25 bp)
GGTACAAACCTGTCTTTCAAGGATT
LOC_Os06g06780
Target Sequence 
ACAAGATCTGAGAGGCCATCGTCGCCGCCGCCGTCGCCGGTCGTCGTCCATCACGCCGGCGGCGGGCGTCGCCTGCAGTG
ATCGATCGGCGACGGAGCCGTTCTTCTGTTCTTGCAGTTGTTGTATGTATTATGCTTGTGAAGAACAATAAGCGTTTATA
TGGTCACTTGTTAATTTTACTTGAGCTTCGATTTTGTTGATAAATCAGTAAATCACTTTGTANTGGTAGTAGTGTTTTAT
TTTCTCTGCTTTCTTTCTTTCCTGAGGAAACTATGTACCGAAGTGTGGTACTAGAGTCAGTCTAGATGGTTTTACGTTAA
AGATCACCATGTTTACAGTTTCGCATGGACAATCACTGCATTTTGTTTTGAACAGAGCATATTAAACAGCAAGCAAAAAT
CGTGTTTCTTTTCACCTCAAGAAATGGTACAAACCTGTCTTTCAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis