Browse Element(s) Details


OsAffx.15292.1.S1_at

Description tigr:9634.m00621
TID=OsAffx.15292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0689011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15292.1.S1_at--674--1151Chr06:3269205..3269229 (25 bp)
AGTCATGTAAGTGCTGTTCGTCGGA
LOC_Os06g06890
OsAffx.15292.1.S1_at--900--1951Chr06:3269229..3269253 (25 bp)
ACTGGAGAGCAAGTCGCCGTTCGTT
LOC_Os06g06890
OsAffx.15292.1.S1_at--879--7351Chr06:3269314..3269338 (25 bp)
GTGAACGCCGCCCACGGAGCCATGA
LOC_Os06g06890
OsAffx.15292.1.S1_at--273--571Chr06:3269437..3269461 (25 bp)
ATCCTCGCTTGGCTGGTGGCGACTT
LOC_Os06g06890
OsAffx.15292.1.S1_at--996--2151Chr06:3269469..3269493 (25 bp)
ACAGCGTCTTCATCAGCGCGCGTCA
LOC_Os06g06890
OsAffx.15292.1.S1_at--1086--1811Chr06:3269507..3269531 (25 bp)
ACGCGCTGTCGTTGAGTCCGGCCAC
LOC_Os06g06890
OsAffx.15292.1.S1_at--530--4531Chr06:3269588..3269612 (25 bp)
GCCGCCTAGCCAGAGCATGTTGAGA
LOC_Os06g06890
OsAffx.15292.1.S1_at--307--6651Chr06:3269606..3269630 (25 bp)
GTTGAGAATCATCAGAACCGCCGGA
LOC_Os06g06890
OsAffx.15292.1.S1_at--269--3271Chr06:3269618..3269642 (25 bp)
CAGAACCGCCGGAAACGTCGTCAAG
LOC_Os06g06890
OsAffx.15292.1.S1_at--898--4011Chr06:3269659..3269683 (25 bp)
CGTCGTGGTGCCGAGGCGTCTTCAA
LOC_Os06g06890
OsAffx.15292.1.S1_at--7--4071Chr06:3269670..3269694 (25 bp)
CGAGGCGTCTTCAAGCCGTGCTGTT
LOC_Os06g06890
Target Sequence 
AGTCATGTAAGTGCTGTTCGTCGGACTGGAGAGCAAGTCGCCGTTCGTTGTCATGTCCGGACGAAGGGCCTCGTCATGCT
ACCTCGCCGGAATACTCCGCCTCGACATCGTGAACGCCGCCCACGGAGCCATGACGCCGCCCTCGCCGGAGTCGCCATGC
CGAACGCCTCGCCGACCGTCTTCGGCGGTGTTGTCATCTTCCTCACGCCGTGGCGCCGCCGGAGCACGGGCCATCCTCGC
TTGGCTGGTGGCGACTTCCACCTCACAGCGTCTTCATCAGCGCGCGTCATCATCCTCCTCACACGCGCTGTCGTTGAGTC
CGGCCACACCATCCTCCACCTCGTCGAGATTTGCTGGGTTAACCCAGAGAAGGCCATCTCCGTGCCGCCTAGCCAGAGCA
TGTTGAGAATCATCAGAACCGCCGGAAACGTCGTCAAGCTGCCGTCATTGCCGTCGTCGTGGTGCCGAGGCGTCTTCAAG
CCGTGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis