Browse Element(s) Details


OsAffx.27480.1.S1_at

Description tigr:9634.m00622
TID=OsAffx.27480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0690011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009639biological_processresponse to red or far red light
GO:0009908biological_processflower development
GO:0010017biological_processred or far red light signaling pathway
GO:0010047biological_processfruit dehiscence
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27480.1.S1_at--191--10731Chr06:3272972..3272996 (25 bp)
TTGCAGAGCCTGATACCGAATTCCA
LOC_Os06g06900
OsAffx.27480.1.S1_at--751--2931Chr06:3273119..3273143 (25 bp)
AAGGCATCCATGCTTGACGAAGCCA
LOC_Os06g06900
OsAffx.27480.1.S1_at--246--3471Chr06:3274246..3274270 (25 bp)
CGGTGTTTACTTGAACCCATCTTAT
LOC_Os06g06900
OsAffx.27480.1.S1_at--511--171Chr06:3274269..3274293 (25 bp)
ATTTATCTGGAGCACTTGAGCCTGC
LOC_Os06g06900
OsAffx.27480.1.S1_at--989--10751Chr06:3274284..3274308 (25 bp)
TTGAGCCTGCGCAAGCATCACAGAT
LOC_Os06g06900
OsAffx.27480.1.S1_at--143--3571Chr06:3274299..3274323 (25 bp)
CATCACAGATGTTTGCAGCCCTTGG
LOC_Os06g06900
OsAffx.27480.1.S1_at--202--5051Chr06:3274313..3274337 (25 bp)
GCAGCCCTTGGTGGTAACAACGTCA
LOC_Os06g06900
OsAffx.27480.1.S1_at--147--3071Chr06:3274437..3274461 (25 bp)
AATCTCTAATCCTACCAAGTGTTCC
LOC_Os06g06900
OsAffx.27480.1.S1_at--464--2851Chr06:3274453..3274477 (25 bp)
AAGTGTTCCTAGCACAGCCATTCCT
LOC_Os06g06900
OsAffx.27480.1.S1_at--234--191Chr06:3274486..3274510 (25 bp)
ATTTCACCTGGAGTCATCACAGTCC
LOC_Os06g06900
OsAffx.27480.1.S1_at--1064--7971Chr06:3274535..3274616 (25 bp)
GGATCCTCTGAGTTTCACAAGATTT
LOC_Os06g06900
Target Sequence 
TTGCAGAGCCTGATACCGAATTCCAACAAGACTGACAAGGCATCCATGCTTGACGAAGCCATCGAGTACCTGAAGCAACT
GCAGCTCCAAGTGCAGATGCTCTCAATGAGAAACGGTGTTTACTTGAACCCATCTTATTTATCTGGAGCACTTGAGCCTG
CGCAAGCATCACAGATGTTTGCAGCCCTTGGTGGTAACAACGTCACAGTGGTGCACCCCGGGACAGTGATGCCACCAGTG
AACCAAAGCTCAGGAGCTCATCATTTGTTTGATCCATTGAACTCTCCTCCACAAAATCAACCACAATCTCTAATCCTACC
AAGTGTTCCTAGCACAGCCATTCCTGAGCCTCCATTTCACCTGGAGTCATCACAGTCCCACCTTCGACAATTTCAGTTGC
CTGGATCCTCTGAGTTTCACAAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis