Browse Element(s) Details


Os.4354.1.S1_at

Description gb:NM_185623.1
DB_XREF= gi:34898331
TID=Os.4354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU066268(S5980) corresponds to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) EST AU066268(S5980) corresponds to a region of the predicted gene.~hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0660011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4354.1.S1_at--778--491Chr06:3104835..3104859 (25 bp)
ATCGGCATGCTATCAGTGACCTGGT
LOC_Os06g06600
Os.4354.1.S1_at--157--5211Chr06:3104887..3104911 (25 bp)
GAATTTTCACCTTTCTTGGAACGAT
LOC_Os06g06600
Os.4354.1.S1_at--438--3371Chr06:3105025..3105049 (25 bp)
CACCTTGGAAGTTTTCTCATCTCAG
LOC_Os06g06600
Os.4354.1.S1_at--870--3751Chr06:3105040..3105064 (25 bp)
CTCATCTCAGGTACTTGCGGTTGAA
LOC_Os06g06600
Os.4354.1.S1_at--262--8891Chr06:3106068..3106092 (25 bp)
TGAGGACCATCCTATCAGGCAACAA
LOC_Os06g06600
Os.4354.1.S1_at--943--911Chr06:3106084..3106108 (25 bp)
AGGCAACAACTTGGACGCTGTGAAT
LOC_Os06g06600
Os.4354.1.S1_at--934--6431Chr06:3106156..3106180 (25 bp)
GATCAGGTCGAATTTCTTCTACATG
LOC_Os06g06600
Os.4354.1.S1_at--225--2111Chr06:3106176..3106200 (25 bp)
ACATGTTGTGGAGAATGCCCCTGCA
LOC_Os06g06600
Os.4354.1.S1_at--162--3031Chr06:3106189..3106213 (25 bp)
AATGCCCCTGCACTTGAGGTTTTAA
LOC_Os06g06600
Os.4354.1.S1_at--251--6111Chr06:3106290..3106314 (25 bp)
GAGTGCCGATAGATCTGCTCTGATT
LOC_Os06g06600
Os.4354.1.S1_at--761--9091Chr06:3106305..3106329 (25 bp)
TGCTCTGATTGCTCAACAGTATCTG
LOC_Os06g06600
Target Sequence 
ATCGGCATGCTATCAGTGACCTGGTAAAATGTTTTCCGAACTTGCAAAATCTGAATTTTCACCTTTCTTGGAACGATGCA
GAGACTAAGTTGTTATCAGATACACCTTGGAAGTTTTCTCATCTCAGGTACTTGCGGTTGAAAAACTTTGCAGATTCTGG
GATCGTGGAGACGAATTTTTTTGTCTCTTTTCTCAGGGCTGCTCCTTTTATTGAGAAGTTAGAGATCCATTTTTCCATGA
ATTTATTAATACTGGATGAATCGCATGAGGACCATCCTATCAGGCAACAACTTGGACGCTGTGAATACAATAACCTGAAG
AACATGCGTATCATAGGATATAAAGGTTCAAGAGATCAGGTCGAATTTCTTCTACATGTTGTGGAGAATGCCCCTGCACT
TGAGGTTTTAACTCTAGAGGCAGCTGGAATAGAGTACCAGGAGGTTTCATTTGTGTTGAATGAAGCGTGGATCGACAGAA
TTACTCAGAGTGCCGATAGATCTGCTCTGATTGCTCAACAGTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis