Browse Element(s) Details


Os.52871.1.S1_x_at

Description gb:AK069662.1
DB_XREF= gi:32979686
TID=Os.52871.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033I08, full insert sequence.
FL= gb:AK069662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0657011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06540OsAffx.27472.1.S1_x_at11/116+3066710..3067738AP2 domain containing protein
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52871.1.S1_x_at--601--1891Chr06:3089739..3089763 (25 bp)
ACGTACTCTAGCAGCCTAGCAGGCA
LOC_Os06g06570
Os.52871.1.S1_x_at--616--5051Chr06:3089717..3089741 (25 bp)
GCAGAAGCCACGAGCAGCCAGAGCT
LOC_Os06g06570
Os.52871.1.S1_x_at--162--1691Chr06:3089702..3089726 (25 bp)
AGCCAGAGCTTAGCCAGCCATGGAA
LOC_Os06g06570
Os.52871.1.S1_x_at--676--8911Chr06:3089597..3089621 (25 bp)
TGAGCTCGTCGCCAGCAACAAGAAG
LOC_Os06g06570
Os.52871.1.S1_x_at--875--2211Chr06:3089580..3089604 (25 bp)
ACAAGAAGTCGATCGCCGGCAACAA
LOC_Os06g06570
Os.52871.1.S1_x_at--912--4211Chr06:3089439..3089463 (25 bp)
CCGCGCAGGCTGTCATCAAGACGAT
LOC_Os06g06570
Os.52871.1.S1_x_at--907--1391Chr06:3089421..3089445 (25 bp)
AGACGATGATCGACTCGGTGCGAGC
LOC_Os06g06570
Os.52871.1.S1_x_at--1007--5611Chr06:3089344..3089368 (25 bp)
GACAACTCCGGTGCCATTGGCTGTG
LOC_Os06g06570
Os.52871.1.S1_x_at--606--3431Chr06:3089308..3089332 (25 bp)
CAGTCGCGGACGATCAGCCGGTAGA
LOC_Os06g06570
Os.52871.1.S1_x_at--939--10171Chr06:3089269..3089293 (25 bp)
TATATGTAACCCATCGCTGTCGATT
LOC_Os06g06570
Os.52871.1.S1_x_at--594--4411Chr06:3089237..3089261 (25 bp)
GCCAGGAGTAGTTTCTTTTTTCAAT
LOC_Os06g06570
Target Sequence 
ACGTACTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGGACGAGATGAGGATG
AGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGCGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAA
CAAGAAGTCGATCGCCGGCAACAAGGCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCG
CCGCCGAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCCTCCCCGCGCAGGCTGTCATCAAG
ACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTGGCGCCGACGACAA
CTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAAC
CCATCGCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52871.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis