Browse Element(s) Details


OsAffx.27474.1.S1_at

Description tigr:9634.m00588
TID=OsAffx.27474.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0659011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06550Os.44762.1.S1_at11/116+3073389..3076782expressed protein
LOC_Os06g06560Os.12725.1.S1_at11/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06560OsAffx.24317.1.S1_x_at2/116+3078060..3085809Soluble starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27474.1.S1_at--598--1231Chr06:3095567..3095591 (25 bp)
AGTTCTGTGACTTCTATCTCGTCAG
LOC_Os06g06590
OsAffx.27474.1.S1_at--256--471Chr06:3095552..3095576 (25 bp)
ATCTCGTCAGACCATCAGCAGCTGA
LOC_Os06g06590
OsAffx.27474.1.S1_at--782--3131Chr06:3095491..3095515 (25 bp)
AATTACAGGCACTACAACTCACAAG
LOC_Os06g06590
OsAffx.27474.1.S1_at--767--2011Chr06:3095475..3095499 (25 bp)
ACTCACAAGCCGTTCAATATTCATA
LOC_Os06g06590
OsAffx.27474.1.S1_at--491--7952Chr06:3132698..3132722 (25 bp)
GGATAACTCATCTAGAAACCAGCAT
NONE
OsAffx.27474.1.S1_at--581--1711Chr06:3095414..3095438 (25 bp)
ACCAGCATACTGAAGCCGTTGTCAT
LOC_Os06g06590
OsAffx.27474.1.S1_at--452--7351Chr06:3095306..3095330 (25 bp)
GTGCAATGCATGTAAGACTGCCTTA
LOC_Os06g06590
OsAffx.27474.1.S1_at--510--1371Chr06:3095292..3095316 (25 bp)
AGACTGCCTTAATCTAACACTATTT
LOC_Os06g06590
OsAffx.27474.1.S1_at--91--5371Chr06:3095220..3095244 (25 bp)
GAAGCAACTCAATTTTCTTAACTGA
LOC_Os06g06590
OsAffx.27474.1.S1_at--199--7472Chr06:3095148..3095172 (25 bp)
GTGTGCATGCAACTAACAAGTCATT
LOC_Os06g06590
OsAffx.27474.1.S1_at--609--3491Chr06:3095100..3095124 (25 bp)
CAGGCCATATTTTAGCAACTTTACG
LOC_Os06g06590
Target Sequence 
AGTTCTGTGACTTCTATCTCGTCAGACCATCAGCAGCTGAATTTGCAATGATCAAACAAGAAATTAAAGACAAGTTAATT
ACAGGCACTACAACTCACAAGCCGTTCAATATTCATAAATTATCTAAAATCAACAGGGATAACTCATCTAGAAACCAGCA
TACTGAAGCCGTTGTCATGATTTAATGGCAATGGAGTTGTCTATTGTTTATTTGTATGATACAATACAGCAGTACAAGTG
AACTATTTATATTTAAAGTATGTGCAATGCATGTAAGACTGCCTTAATCTAACACTATTTCTTAGACTGAAAAGGAGCTG
ACAGATGGTCTGGACATGAAAATAAAAGAAGCAACTCAATTTTCTTAACTGAAGACTGGAATATAAAACTAGTATTTTTC
ATGTTAGGATTTAGCATGAGTGTGCATGCAACTAACAAGTCATTGTTCCCAATCATAAAATTAGCTTCAGGCCATATTTT
AGCAACTTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis