Browse Element(s) Details


Os.55784.1.S1_at

Description gb:AK108796.1
DB_XREF= gi:32994005
TID=Os.55784.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C01, full insert sequence.
FL= gb:AK108796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3999011/11meprin and TRAF homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55784.1.S1_at--763--7451Chr02:24173112..24173136 (25 bp)
GTGTCGGCGTGGAAGCTTTATCACT
LOC_Os02g39990
Os.55784.1.S1_at--243--7851Chr02:24173014..24173038 (25 bp)
GGTAGCAGTCATCGCTTGAGTGCCC
LOC_Os02g39990
Os.55784.1.S1_at--619--2091Chr02:24172912..24172936 (25 bp)
ACATCGTCCGTAGCACCTAATGGTG
LOC_Os02g39990
Os.55784.1.S1_at--813--7671Chr02:24172850..24172874 (25 bp)
GGGTAGCTGGTTCAATCCAACCTAA
LOC_Os02g39990
Os.55784.1.S1_at--691--7451Chr02:24172798..24172822 (25 bp)
GTGTCCATTTTGTGCATCAATTCGA
LOC_Os02g39990
Os.55784.1.S1_at--637--91Chr02:24172779..24172803 (25 bp)
ATTCGACGTATCACATTTTGCCTGG
LOC_Os02g39990
Os.55784.1.S1_at--31--8431Chr02:24172756..24172780 (25 bp)
GGCCGTATTTACCAGCTGCTGAGCA
LOC_Os02g39990
Os.55784.1.S1_at--314--8911Chr02:24172737..24172761 (25 bp)
TGAGCAATCCAACGTGATACCCTTT
LOC_Os02g39990
Os.55784.1.S1_at--182--7871Chr02:24172697..24172721 (25 bp)
GGTTTGGCTTTTCTTGCTTGTATTT
LOC_Os02g39990
Os.55784.1.S1_at--1101--6851Chr02:24172678..24172702 (25 bp)
GTATTTTGAACTGGTAGCGCCGTCG
LOC_Os02g39990
Os.55784.1.S1_at--541--1651Chr02:24172663..24172687 (25 bp)
AGCGCCGTCGGCTTGATAGATCAAA
LOC_Os02g39990
Target Sequence 
GTGTCGGCGTGGAAGCTTTATCACTGGATGAGCTTGAGACACTCACAAACATCCACGAGCGGGGTTTAAGACAGATACAT
GCAATTCGGCAAAGGAAAGGTAGCAGTCATCGCTTGAGTGCCCCTTCGCTCCCGCACGTCCCAGGTTTATACTCCTCGCC
TCCTTCAATGGCAGTTGGTCTGCCGTCCTCGCTGATCCCCACATCGTCCGTAGCACCTAATGGTGCAGGCATCCATGGAA
ATGGCCACATGAATGGTTCCATGGGTAGCTGGTTCAATCCAACCTAATTCAGAAGATGCAGCACCGCAACACCGGTGTCC
ATTTTGTGCATCAATTCGACGTATCACATTTTGCCTGGCCGTATTTACCAGCTGCTGAGCAATCCAACGTGATACCCTTT
TTGTCCTCGCCATTTGGTTTGGCTTTTCTTGCTTGTATTTTGAACTGGTAGCGCCGTCGGCTTGATAGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis