Browse Element(s) Details


Os.27139.2.S1_at

Description gb:CB642409
DB_XREF= gi:29637400
DB_XREF=OSJNEb02J06.f
CLONE=OSJNEb02J06
TID=Os.27139.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27139 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180001.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3991011/11K+ channel tetramerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39900Os.14919.1.S1_at2/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900Os.56216.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900OsAffx.29313.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39910Os.27139.2.S1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910Os.27139.1.A1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910OsAffx.1564.1.A1_x_at2/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008076cellular_componentvoltage-gated potassium channel complex
GO:0016020cellular_componentmembrane
GO:0005249molecular_functionvoltage-gated potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27139.2.S1_at--17--3991Chr02:24130414..24130438 (25 bp)
CGGGTGTTCGAGACGATGGCCTCCA
LOC_Os02g39910
Os.27139.2.S1_at--697--7751Chr02:24130412..24130436 (25 bp)
GGTGTTCGAGACGATGGCCTCCACG
LOC_Os02g39910
Os.27139.2.S1_at--649--691Chr02:24130351..24130375 (25 bp)
ATGATCGACGCCTCCTGGAACCACG
LOC_Os02g39910
Os.27139.2.S1_at--447--7551Chr02:24130299..24130323 (25 bp)
GTGGCGCGGACGAGTACTTCATCGA
LOC_Os02g39910
Os.27139.2.S1_at--176--8111Chr02:24130292..24130316 (25 bp)
GGACGAGTACTTCATCGACCGTGAC
LOC_Os02g39910
Os.27139.2.S1_at--1038--1171Chr02:24130287..24130311 (25 bp)
AGTACTTCATCGACCGTGACCCGGA
LOC_Os02g39910
Os.27139.2.S1_at--586--9611Chr02:24130281..24130305 (25 bp)
TCATCGACCGTGACCCGGAGTGCTT
LOC_Os02g39910
Os.27139.2.S1_at--880--1771Chr02:24130275..24130299 (25 bp)
ACCGTGACCCGGAGTGCTTCGCGGT
LOC_Os02g39910
Os.27139.2.S1_at--833--9091Chr02:24130191..24130215 (25 bp)
TGCTCTGCCGCGAGGCGCTCTACTA
LOC_Os02g39910
Os.27139.2.S1_at--459--4251Chr02:24130014..24130038 (25 bp)
CCGTGCGCGTGTACAACTGGGTGAT
LOC_Os02g39910
Os.27139.2.S1_at--365--1831Chr02:24129960..24129984 (25 bp)
ACGCGCCGGTCAACGACGCGGCCTA
LOC_Os02g39910
Target Sequence 
CGGGTGTTCGAGACGATGGCCTCCACGCTCGCCAGCGCCGGCCGGGACACCATGCTCGGCGCCATGATCGACGCCTCCTG
GAACCACGGCGGCGGCGGGGACGGCGACGGCGAGGGTGGCGCGGACGAGTACTTCATCGACCGTGACCCGGAGTGCTTCG
CGGTGCTGCTCGACCTGCTCCGCACGGGGGGGCTCCACGTGCCGCCCCACGTCGCCGACNNGGTGCTCTGCCGCGAGGCG
CTCTACTACGGTCTCCTCGACCGCGTCCGCGCCGCGCGGTGGGGGCCGTTCGACGGGGACCGGCTGCGGCTGGCGGCGTC
CGTGGCCGGGAGCGCCGCGGGCGACGGGACGGCCGTCCGCGCCGCGCCCGACGGCGGCTGCTGCGTCGCGCACGGCGGCG
CCGTGCGCGTGTACAACTGGGTGATGGAGGAGCGCCGGGCCGTGCACCTCNACCACGCGCCGGTCAACGACGCGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27139.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis